Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1919 ATGTTCAAGTTCAATTCATGGCGCCATAAAACCCTAATCTATTATCTCAAGGGATTAACATTACAATCCCCAAACCCTAACCCTTTTTTCCAACATTACCCATTACCATTTTCTCTGCATTTCTCCACCACTACTTCCGATGATTCAACCTCATTTGCAGCCTCCTACCTCATCAACAATCTTGGGTTTTCCACACAATCTGCTTCCAAACTCTGTTCCACTTACAATTTTACTTTCAAGACTGCCCAAAACCCTGATTCTGTTCTCCACGTCTTTAGAAACCATGGTTTCTCAGATTCCCAACTTCGCCATATGATTGCCAAGTTACCAGAACTACTTTCCTGCAACCCCTCCAAAAGGGTGTTGCCAAAGTTTCAATTTTTTCTCTCCAAAGGTGCATCTAAGTCTGACATTGTTAACCTTATCAGTCAGAACCCTAGAATCTTATCTCCAAGCCTGAACAATCATATAGTTCCAACCTATGAATTGGTTTATAGATTCTTGAAATCTCATAAGGAGACTATTGCTCGTGTAATTCTTAATTCAGCTTTTCATGGAGACTATCATGTCCCTTCTAACATCAAATTGCTTATTGAGAACGGAGTGTCTGAGTCAAACATTGCAAGATTGCTTCGGAGCTGGCCCCTGGCATTGCGGACACGATACAACATGGTGAAGTTGGTGGAGGAATTAAAGGATTTAGGGTTTAATCCTTCAAAAACAACTTTCTCAATAGCAGTGGTTGCCAAAACATATGCAAGCGAAACCCGGTGGAAAGAGAAAGTAGATGCTTTTAAGAAATGGGGTTGGTCTGATGAAGATGTTGTGAATGCATTTAAAAAGCAGCCTTACTGTATGTTAGTATCAATTGATAAAATTAATTTATTGATGAATTTTTGGGTCGAACAGTTGGGTTGGGATCCTCTTGTCCTCGCCAAAGGACCGTCACTTTTTTTGTTAAGCTTGGAAAAAAGGATCATTCCTAGGGCCCAAGTAGTGCAATTTCTGCTGAAGAAAGGTCTGCGAGAAAAGAATGCAAGCTTAACTTCTCCATTTATAGACAGCAATAAGTTGTTCCTTGATAGATATATCAAACGTTATAAGGAGGAGTCATCTTATCTATTAAAGCTTTATGAAGAAAAATTTACTCTTGAGGACAAAACTGAAATGTCATGA 1176 0.3878 MFKFNSWRHKTLIYYLKGLTLQSPNPNPFFQHYPLPFSLHFSTTTSDDSTSFAASYLINNLGFSTQSASKLCSTYNFTFKTAQNPDSVLHVFRNHGFSDSQLRHMIAKLPELLSCNPSKRVLPKFQFFLSKGASKSDIVNLISQNPRILSPSLNNHIVPTYELVYRFLKSHKETIARVILNSAFHGDYHVPSNIKLLIENGVSESNIARLLRSWPLALRTRYNMVKLVEELKDLGFNPSKTTFSIAVVAKTYASETRWKEKVDAFKKWGWSDEDVVNAFKKQPYCMLVSIDKINLLMNFWVEQLGWDPLVLAKGPSLFLLSLEKRIIPRAQVVQFLLKKGLREKNASLTSPFIDSNKLFLDRYIKRYKEESSYLLKLYEEKFTLEDKTEMS* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1919 391 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 20 385 - -
Tpr5g1919 391 PANTHER CGI-12 PROTEIN-RELATED 20 385 IPR003690 GO:0003690|GO:0006355
Tpr5g1919 391 SMART mt_12 276 307 IPR003690 GO:0003690|GO:0006355
Tpr5g1919 391 SMART mt_12 208 237 IPR003690 GO:0003690|GO:0006355
Tpr5g1919 391 SMART mt_12 139 174 IPR003690 GO:0003690|GO:0006355
Tpr5g1919 391 SMART mt_12 308 342 IPR003690 GO:0003690|GO:0006355
Tpr5g1919 391 SMART mt_12 103 134 IPR003690 GO:0003690|GO:0006355
Tpr5g1919 391 Pfam mTERF 89 237 IPR003690 GO:0003690|GO:0006355
Tpr5g1919 391 Pfam mTERF 191 359 IPR003690 GO:0003690|GO:0006355
Tpr5g1919 391 Gene3D Transcription termination factor 3, mitochondrial 186 377 IPR038538 -
Tpr5g1919 391 Gene3D Transcription termination factor 3, mitochondrial 55 185 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1919 Tpr-Chr5 38511990 38514791 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tpr5g1919 mTERF 4.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1919 K15032 - gmx:102663414 387.111