Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1915 ATGAGCAGTGGTGGTAAGAAGCCGGTGAATGAGAATTGTTACAATTGTGGAGAACGGGGTCATATGTCTTATGATTGCCCGAAGAAGGGAGATAGGTGTAAGAATTGTGGAAAGCTGGGCCACAAGACCGAAGCTTGCAGAGTAAAAGTGGTGTGTTTCAATTGTGGTGAAGAAGGCCACAAGAGTCCGACTTGTAAGAAGCCCAAGAAGGTGATGGGCAAGGTGTTTGCTTTGAGTGGAGAGGATGCTAGCCTTGAGGACAATCTCATTAGAGGTACGTGTTTCATCTATAACACTCCTTTAATTGCGATTATAGATACGGGAGCGACGCATTCTTTTATTTCTTTGGATTGTGCGAAGCGTCTTAGTATTCCTTTAACGGATATGACGGGTAGGATGGAAATAGAAACTCCTGCTAATGGTTCAGTGATTACCCGACAAGTATGTCGTAATTGCCCCGTAACCATTTTTGGTAGGCACTTTGGTATGGATTTAGTGTGTATTCCACTTAGTGGTATGGATGTAATTTTTGGTATGAATTGGTTAATCTTCAACCGAATTCATATCAACTGTCGTGGGAAGGCCGTTGTTTTTCCGAAGCCGGAGGAGAACTTGCATTTGATGAGCGGGAAGGAAGTATCGGAAGCGTTGAAAGAACATGTCGAGATGTTCATGATGTTTGCATCATTGAAACTCGAAGGAGGAGTTAAGATAGAAGAGTTACCGATCGTTTGTGAATTCCCAGATGTGTTTCCGGATGATATATCTGACGTGCCTCCAAAGCGAGAGGTAGAGTTTTCTATCGACCTAGTACCTGGAACTAGCCCGATATCGATGGCGCCGTATCGAATGTCAGCGTCTGAGTTGAATGAATTGAAGAAGCAACTTGAAGAGCTGCTTGAGAAGAGGTTTGTTCGACCGAGTGTTTCGCCATGGGGAGCGCCGGTATTGCTTGTGAAGAAGAAAGATGGGAGCATGAGATTATGTATAGACTATCGTCAGTTGAACAAAGTGACGATCAAGAATAAATAT 1032 0.437 MSSGGKKPVNENCYNCGERGHMSYDCPKKGDRCKNCGKLGHKTEACRVKVVCFNCGEEGHKSPTCKKPKKVMGKVFALSGEDASLEDNLIRGTCFIYNTPLIAIIDTGATHSFISLDCAKRLSIPLTDMTGRMEIETPANGSVITRQVCRNCPVTIFGRHFGMDLVCIPLSGMDVIFGMNWLIFNRIHINCRGKAVVFPKPEENLHLMSGKEVSEALKEHVEMFMMFASLKLEGGVKIEELPIVCEFPDVFPDDISDVPPKREVEFSIDLVPGTSPISMAPYRMSASELNELKKQLEELLEKRFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNKY 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1915 344 ProSiteProfiles Zinc finger CCHC-type profile. 13 28 IPR001878 GO:0003676|GO:0008270
Tpr5g1915 344 SUPERFAMILY Acid proteases 88 189 IPR021109 -
Tpr5g1915 344 SUPERFAMILY Retrovirus zinc finger-like domains 49 75 IPR036875 GO:0003676|GO:0008270
Tpr5g1915 344 ProSiteProfiles Zinc finger CCHC-type profile. 52 67 IPR001878 GO:0003676|GO:0008270
Tpr5g1915 344 CDD retropepsin_like 93 182 - -
Tpr5g1915 344 Pfam Retroviral aspartyl protease 71 203 - -
Tpr5g1915 344 Gene3D Acid Proteases 79 214 IPR021109 -
Tpr5g1915 344 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 243 331 - -
Tpr5g1915 344 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 92 203 - -
Tpr5g1915 344 Coils Coil 282 302 - -
Tpr5g1915 344 Gene3D - 30 74 - -
Tpr5g1915 344 ProSiteProfiles Zinc finger CCHC-type profile. 32 47 IPR001878 GO:0003676|GO:0008270
Tpr5g1915 344 SUPERFAMILY DNA/RNA polymerases 243 344 IPR043502 -
Tpr5g1915 344 PANTHER RNA-DIRECTED DNA POLYMERASE HOMOLOG 243 331 - -
Tpr5g1915 344 PANTHER RNA-DIRECTED DNA POLYMERASE HOMOLOG 92 203 - -
Tpr5g1915 344 SMART c2hcfinal6 12 28 IPR001878 GO:0003676|GO:0008270
Tpr5g1915 344 SMART c2hcfinal6 32 48 IPR001878 GO:0003676|GO:0008270
Tpr5g1915 344 SMART c2hcfinal6 51 67 IPR001878 GO:0003676|GO:0008270
Tpr5g1915 344 Pfam Zinc knuckle 12 28 IPR001878 GO:0003676|GO:0008270
Tpr5g1915 344 Pfam Zinc knuckle 51 67 IPR001878 GO:0003676|GO:0008270
Tpr5g1915 344 SUPERFAMILY Retrovirus zinc finger-like domains 10 48 IPR036875 GO:0003676|GO:0008270
Tpr5g1915 344 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 255 344 - -
Tpr5g1915 344 Gene3D - 4 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1915 Tpr-Chr5 38465002 38468268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1915 13 83 C2H2 Transcription Factor Family AT5G20220 36.667 7.53e-07 48.5