Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1880 ATGCTTTTGGCGGCAAATTACTTGGAGATTAGGTGTCTATTCTTCTCCATTGGTAAAGCTAAACCTCAACCCATCTTCTCCATTGATGAAGCCTTTCAAAATCAACTCAAAACAATGTTAAGTCAAACAATGACAATAGTTGCAACACCTAGTGTTGGTATGAAATTTGATAGTGTAAATGAAGCATGGGAATTTTGGGCTGCGTATGGGAAAGAAAAAGGCTTTGGAGTTAGAAAACAATACACCAACAAAAGGAAGGATGGCTATATTAGATCGTTCCGATTCGTTTGTTGTAAAGAGGGTCATCGAACAAAGAATCCGACATCGCTCTTGGTGAAGAATCCTAAAGCTGAGACAAGAACCGGCTGCCCGACGAGAATTGCACTTAGTAGAAAGGATGAAAAGTTTGTAATCCACGAGTTCGTAGAAGCTCATAACCACCTTTTGCAGCTTCCAGAAACAACACACATGTTAGCCTCACATCGTAAAATATCCGAAGTTCAAGCATATGAGATTGAAATGGCGGAAGACTCTGGGTTGATGCAAAAGGCCTCATTTCAGCTCATGAGTGCACATGTTGGAGGTAGAGATAATCTTGGATATACTCGGCTGGATGCGAAGAACTATCTAAAAGAAAGAAGAAAGTGTAGGATGTTATTTGGAGAAGTTGGTAGTCTCATGGAATATTTTCAAAAACAACATTTGGAAAATCCATCATTTTACCATGCATATCAAATGGATTGTGAAGAACAAATTACAAATGTCTTTTGGACAGATGCAAGAATGATTTCGGACTATGGATATTTTGGTGATGTGGTTTCTTTGGATACAACATATTGTACCAATGGTGCTAATAGACCATTGGCATTATTTTCGCGACAATATGTTGGGGATTTGGTTGTTGTCTTGTGTACTTATCCCTATATTTGGTTGTTGAATGCTTGTGAATGTAGGCAGAATGATGATGAGTTGGAGAATGAAGATAGTTATTATATTGCAAGTGACGAGGAAGACGACGATGACGATGATGATTGTTACACTGATGATAGTGAACAGGATGAATGTGTGGATTTGAGTGTTGTTTTTCCACCTGAAAGATTTTGCTTGATTGATACTAATGTAGGTGCTATGACAACAAATATTCCCACAACTGCAGCTGATTTTCGATATGAATTTCATGAAGATTCTGATGTTTTACATACTCCACCAGAGAGTGAAGATGAAGAGCTTGGTCACAACTATCCAACTTTTAAGATGAGTGATGGGAGTATTGGAGTTCAGTTTCATAAAGGTTTGACATTCAACAATAAACAACAAGCAAATGAGGCAATTAAAGAGCATGCAATGGAGACTATGAAAAACTTATACATCAAGAAAAATGAAAAAGAATTCTTGGTTGTAAAACTTAGCTGA 1413 0.3751 MLLAANYLEIRCLFFSIGKAKPQPIFSIDEAFQNQLKTMLSQTMTIVATPSVGMKFDSVNEAWEFWAAYGKEKGFGVRKQYTNKRKDGYIRSFRFVCCKEGHRTKNPTSLLVKNPKAETRTGCPTRIALSRKDEKFVIHEFVEAHNHLLQLPETTHMLASHRKISEVQAYEIEMAEDSGLMQKASFQLMSAHVGGRDNLGYTRLDAKNYLKERRKCRMLFGEVGSLMEYFQKQHLENPSFYHAYQMDCEEQITNVFWTDARMISDYGYFGDVVSLDTTYCTNGANRPLALFSRQYVGDLVVVLCTYPYIWLLNACECRQNDDELENEDSYYIASDEEDDDDDDDCYTDDSEQDECVDLSVVFPPERFCLIDTNVGAMTTNIPTTAADFRYEFHEDSDVLHTPPESEDEELGHNYPTFKMSDGSIGVQFHKGLTFNNKQQANEAIKEHAMETMKNLYIKKNEKEFLVVKLS* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1880 470 PANTHER OS03G0181600 PROTEIN 42 291 - -
Tpr5g1880 470 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 42 291 IPR031052 GO:0006355
Tpr5g1880 470 Pfam FAR1 DNA-binding domain 64 149 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1880 Tpr-Chr5 37864247 37874262 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr5g1880 FAR1 1.1e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1880 - - cam:101507947 339.347