Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1876 ATGTGTGGAGGTGCTATCATTTCTGATTTCATTGGTGTCAAGCGTGACCGTGACCTATGGTTTGAGCTTGATCCTTCTGTTGATCTACTTGGTCTTGGTTCTGCTTTTAACACCCCCAATTTCAAAGAGTTACCACCTCTTAACTTTGAGAAATTCTTCTCTTCAGACAAAAAAGTGGTGGCATGTGACAGTGCTGAGAAGAAACAACAAAGTGCCGTAGAGAAGGGAAAGAAGAGCACCGGAGGAAAAAGAGTCCGTAAGAATGTGTACAGAGGAATCAGGCAGAGGCCATGGGGCAAGTGGGCTGCTGAAATAAGGGACCCACAACAAGGTGTTCGTGTTTGGCTCGGTACTTTCTCGACTGCTGAAGAAGCCGCTAGAGCCTATGATGCTGCCGCGAAGCGCATCCGTGGTGACAAGGCGAAACTCAACTTCCCCGACACTCCTGCCATGTGTCCTGCCGCTGCTGCTGCTGTCACTGCTCCTCCAGCAAAGAAGCAGTGTCTTAGCTCCGATCAAGCTAGCTCCCAGGCTAGCTCAGAGTCTGCTGGGTCATCTATTGGGTATGGGCTTGATGAGGAAATGGAAATCAAAAAGAAAATGTCTGACCTTGAATGGATCCTCGGTTTAGATAATGATCTTCCTCAGGTTCAAGCCCAAGCCCAGACCCAAGTTGTGGCCCAGCCTGAGCTTGAGCCCATGGGCTTTACCTTGCCTTCTGACTGGGACAACAGCTTCCTGGACATGTGGAGTGGTGAAGACATGGTTGATCCCATCTCTCACCTGATTTATAACTAG 798 0.4925 MCGGAIISDFIGVKRDRDLWFELDPSVDLLGLGSAFNTPNFKELPPLNFEKFFSSDKKVVACDSAEKKQQSAVEKGKKSTGGKRVRKNVYRGIRQRPWGKWAAEIRDPQQGVRVWLGTFSTAEEAARAYDAAAKRIRGDKAKLNFPDTPAMCPAAAAAVTAPPAKKQCLSSDQASSQASSESAGSSIGYGLDEEMEIKKKMSDLEWILGLDNDLPQVQAQAQTQVVAQPELEPMGFTLPSDWDNSFLDMWSGEDMVDPISHLIYN* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1876 265 PANTHER DNA-BINDING DOMAIN 1 176 IPR044808 GO:0003700|GO:0009873
Tpr5g1876 265 PRINTS Ethylene responsive element binding protein signature 90 101 IPR001471 GO:0003700|GO:0006355
Tpr5g1876 265 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
Tpr5g1876 265 Pfam AP2 domain 89 138 IPR001471 GO:0003700|GO:0006355
Tpr5g1876 265 Gene3D AP2/ERF domain 89 147 IPR036955 GO:0003700|GO:0006355
Tpr5g1876 265 SMART rav1_2 89 152 IPR001471 GO:0003700|GO:0006355
Tpr5g1876 265 CDD AP2 90 148 IPR001471 GO:0003700|GO:0006355
Tpr5g1876 265 ProSiteProfiles AP2/ERF domain profile. 89 146 IPR001471 GO:0003700|GO:0006355
Tpr5g1876 265 PANTHER EREBP TRANSCRIPTION FACTOR 1 176 - -
Tpr5g1876 265 SUPERFAMILY DNA-binding domain 89 147 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1876 Tpr-Chr5 37826182 37828623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1876 1 225 AP2-EREBP Transcription Factor Family AT3G16770 43.701 1.65e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr5g1876 AP2 4.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1876 K09286 - gmx:100817253 207.994