Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1872 ATGTCGAAATTCTTTGCTCAGGCTGGTGGTGGTACCTCTGATGATGATACTGATTATGATGACTCGGTTGATGATGTACCGATTGAACCTGATACCGATCCTTCAAAAAGTAAGTACATGGTTGATAATGCTAGTGACAGCGATGAAGACGATGGTCACAAGCGTGTTGTTAGGTCGGCCAAAGATAAGCGATTTGAAGAGATGGCTTTAACGGTTGACCAGATGAAGAATGCAATGAAGATCAATGATTGGGTGAGTTTGCAAGAGAGTTTTGATAAGATTAATAAACAACTCGAGAAAGTGATGCGTGTTGCTGAGACTGATAAGGTTCCTAAGCTTTATATTAAGGCTCTTGTTTTGTTGGAAGATTTCTTGGCTCAGGCTTTGGCGAATAAGGATGCTAAGAAGAAGATGAGTAGTAGCAATGCCAAAGCCTTGAACTCGATGAAGCAGAAATTGAAGAAGAATAATAAGCAATATGAGGAGCTGATTACCAAATGTAGGGAGAGTCCTGAGAGCGAGGAGGAAAAGGATGACGATGAGGAGAGCGAGGAAGACGATGAGAGTGATGGTGAGATTATTGAACCTGATCAGCTCCGGAAGCGGGAACAAAGATCGGATTCAGAACCTGACTACGATGACGGAAATGATGATGCTGGTGATGGACCTTGGGACCAAAAGCTTAGCAAAAAAGATAGACTTTTGGATAGACAGCTGATGAAAGACCCTAGGGAAGTCACATGGGATATTGTTAACAAGAAGTTTAAAGAGATTGTGGCAGCTAGGGGAAAGAAGGGAACTGGAAGGTTTGAACAGGTTGAACAACTTACCTTCTTAACAAAAGTGGCTAAAACACCAGCACAGAAGCTTGAAATTCTTTTCAGCGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGTCTCAGTGGCCATATGCCCATAACTGTGTGGAAAAAATGTGTTCAGAATATGCTGCTCATTCTTGATATTCTAGTTCAATTTCCAAACATAAAGGTTGATGATTCAGTGGAGCCAGATGAGAATGAAACTCAAAAAGGGGCTGACTATGATGGACCAATTAGGGTTTGGGGTAACTTAGTTGCCTTCTTAGAAAAAATAGATACTGAGTTTTTCAAGAGCTTGCAGTGCATAGATCCTCATACACGTGAGTATGTCCAGAGACTCAGAGATGAGCCCATGTTTTTGGTTCTTGCTCAAAATGTCCAGGAATATCTTGAAAGGAGTGGAGATTTCAAAGCATCTTCTAAGGTGGCCTTGAGGAGGGTTGAACTCATTTACTACAAACCACAAGAGGTTTATGATGCCATGAGAAAATTGGCTGAGCTGACAGAAGGTGGAGATAATGAAGGCGAGGCTAGCGAGCAGTCCAAAGGGTTTGAGGATACAAGAATTCCTACTGCATTTGTTGTTACTCCAGAGCTTGTGTCTCGGAAACCCACCTTCCCGGAGAATAGCAGGGCCCTAATGGATGTATTAGTTTCACATATATACAAATATGGTGACGAGCGCACTAAAGCACGGGCAATGCTTTGTGATATATATCACCATGCTCTCCTTAATGAGTTCTCAATAGCCCGTGATCTGTTGCTTATGAGTCATTTGCAAGATAATGTTCAGCACATGGACATTTCAACGCAGATACTTTTTAACAGGGCTATGTCACAGTTAGGTCTTTGCGCTTTTCGGATTGGATTGATTTCTGAAGCACATGGCTGCCTATCTGAACTTTATTCAGCTGGAAAGGTGAAAGAGTTGCTTGCACAAGGCGTGTCACAAAGTCGTTATCATGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGCCAGATGCCATATCATATGCACATAAATCTTGAGCTCCTGGAAGCAGTGCATCTTATATCTGCTATGCTGCTGGAGGTTCCCAATATGGCAGCCAATGTTCATGATGCAAAGCATAGGGTCATCAGTAAGAATTTCCGCCGTTTGCATGAGAACAGTGATAAACAAACGTTTATTGGTCCACCTGAGAGTGTCAGAGATCACATTTTGGCTGCCACTAGGGCTCTTATTAAAGGAGACTTCAACAAGGCTTTTGAAGTTATTACCTCTCTTGATGTATGGAAATTTGTTAAAAACCGTGACACCGTATTGGAAATGCTGAAGGACAAAATCAAGGAAGAGGCACTTAGGACATATCTCCTTACCTTCTCTTCATCCTATGAATCTCTGAGTCTGGATCAAGTCACGAAATTTTTCGACCTATCTGTTCCTCGTACTCATAGCATTGTGAGTAGGATGATGATCAACGAGGAACTTCATGCAAGTTGGGACCAGCCAACTGGGTGCATTGTTTTCCAAAACGTTGAGCATTCTAGGCTGCAAGCATTGGCGTTCCAATTGACAGAGAAATTATCCATCCTTGCAGAGAGTAATGAAAGAGCCACAGAGGCAAGACTAGGTGGTGGATTGGATCTGCCTCCTAGACGAAGGGATGGACAGGACTATGCTGCTGCTGCTGCTGCTGGCGGAGGTGGTGGAACAGGGCCTTCAGGTGGTAGGTGGCAGGACTTGTCCTATTCTCAGACACGGCAAGGGAGTGGACGTGCAGGATATGGTAATGCTGGTGCAAGGCCATTGGCATATGGTCAAGCAGCTAGGAGTGGCTATTCAAGGGATCGAGTGGGGCGTGCTGGTTATCAGAGTTCAGGGAGGAGTAATCAAGGGGGTTCAGGACTGAGGGGATCCCAGGGAGATGTATCTACTCGCATGGTTAGCCTTAAGGGAGTTCGTGCTTAA 2799 0.4391 MSKFFAQAGGGTSDDDTDYDDSVDDVPIEPDTDPSKSKYMVDNASDSDEDDGHKRVVRSAKDKRFEEMALTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVAETDKVPKLYIKALVLLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELITKCRESPESEEEKDDDEESEEDDESDGEIIEPDQLRKREQRSDSEPDYDDGNDDAGDGPWDQKLSKKDRLLDRQLMKDPREVTWDIVNKKFKEIVAARGKKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPITVWKKCVQNMLLILDILVQFPNIKVDDSVEPDENETQKGADYDGPIRVWGNLVAFLEKIDTEFFKSLQCIDPHTREYVQRLRDEPMFLVLAQNVQEYLERSGDFKASSKVALRRVELIYYKPQEVYDAMRKLAELTEGGDNEGEASEQSKGFEDTRIPTAFVVTPELVSRKPTFPENSRALMDVLVSHIYKYGDERTKARAMLCDIYHHALLNEFSIARDLLLMSHLQDNVQHMDISTQILFNRAMSQLGLCAFRIGLISEAHGCLSELYSAGKVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLISAMLLEVPNMAANVHDAKHRVISKNFRRLHENSDKQTFIGPPESVRDHILAATRALIKGDFNKAFEVITSLDVWKFVKNRDTVLEMLKDKIKEEALRTYLLTFSSSYESLSLDQVTKFFDLSVPRTHSIVSRMMINEELHASWDQPTGCIVFQNVEHSRLQALAFQLTEKLSILAESNERATEARLGGGLDLPPRRRDGQDYAAAAAAGGGGGTGPSGGRWQDLSYSQTRQGSGRAGYGNAGARPLAYGQAARSGYSRDRVGRAGYQSSGRSNQGGSGLRGSQGDVSTRMVSLKGVRA* 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1872 932 MobiDBLite consensus disorder prediction 132 229 - -
Tpr5g1872 932 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 2 931 - -
Tpr5g1872 932 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 720 808 - -
Tpr5g1872 932 MobiDBLite consensus disorder prediction 884 932 - -
Tpr5g1872 932 Pfam PCI domain 659 787 IPR000717 -
Tpr5g1872 932 MobiDBLite consensus disorder prediction 1 60 - -
Tpr5g1872 932 SUPERFAMILY "Winged helix" DNA-binding domain 715 790 IPR036390 -
Tpr5g1872 932 Coils Coil 143 170 - -
Tpr5g1872 932 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 1 871 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Tpr5g1872 932 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 2 931 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Tpr5g1872 932 SMART PINT_4 720 808 IPR000717 -
Tpr5g1872 932 MobiDBLite consensus disorder prediction 194 209 - -
Tpr5g1872 932 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 44 651 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Tpr5g1872 932 MobiDBLite consensus disorder prediction 29 60 - -
Tpr5g1872 932 MobiDBLite consensus disorder prediction 134 153 - -
Tpr5g1872 932 MobiDBLite consensus disorder prediction 154 173 - -
Tpr5g1872 932 ProSiteProfiles PCI domain profile. 619 791 IPR000717 -
Tpr5g1872 932 MobiDBLite consensus disorder prediction 174 193 - -
Tpr5g1872 932 MobiDBLite consensus disorder prediction 14 28 - -
Tpr5g1872 932 MobiDBLite consensus disorder prediction 900 923 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1872 Tpr-Chr5 37740515 37748493 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1872 2 932 Eukaryotic Initiation Factors Gene Family AT3G56150 67.230 0.0 1167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1872 K03252 - gmx:100781967 1427.92