Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1785 ATGGAATGTGAGGAGACATGGTGGAAACAGAGATCAAGAGAATTATGGCTTAAACATGGGGACAAAAATACCAAGTATTTTCATATGAAGGCTAACATTAGAAGAAATAAGAATAAGATTGAAAAAATCACTGACTCTCATGGACACACTCACACTGATGATGGTGGAATAGAGAAAGTTTTAGTGGATCACTTCAAGACTTGGTTCACAAAACAAGATGCTCAAGCAATACCTGATACTATCACAGTAGTAAAAGATAGAATCAACACTGACATGTACCAAGAGCTGAATAGACATTTTACTAAAGAGGAAGTATTTCAAGCAATAAAGGACATGAAAGCTCTTGCAGCCCCTGGCCCTGATGGTTTACCTGCTATATTCTACCACACTCACTGGGAGGTCATTGGAAAGGAGGTAACTGACATGGTGCTAAATGTTCTTAATAACAATGGTGACCCTAGCCACCTAAATAACACGTATATCTGCCTCATCCCAAAAATAAATAACCCTGCATCCCCTAGTGACTTTAGGCCCATATCCCTCTGTAATGTTACACTCAAGATCATCACCAAAACCATAGCCAACAGAATAAAAACAATTCTACCGGATGTGATTAGCCCTAACCAAAGTGCCTTCATACAAGGCAGACTCATTACTGACAATGCCCTCATTGCCTCTGAGATTTTTCATTATCTTGCCCATACTAAAAGGAAAAATGGTCATGTTGGGATCAAGACGGATATGACAAAAGCTTATGACAGGGTTGAATGGGAGTTCCTTGAGGCAACTATGTCCATTATGGGGTTCCCAGCTACTATGGTGCAAACTATTATGAAATGTGTTTCTACAGTCAAATTTTCCATACTCATCAATGGTTACCCATCACAAGAGTTCTATCCTCAAAGGGGACTCAGACAGGGAGACCCTCTCTCACCCTACCTTTTTATTATCTGTGCTAATGTTTTATCGGGGCTAATATCAAGAGCCCAACAAGAAAAACTTATCCATGGGGTCAAAATATCCCAAGGGGCTCCTGAAATTAGTCACTTACTCTTTGCTGATGACAGTCTAATTTTTTGCAGGGCAACTAGTAAGGAGGTCTCCACCATCCATGAAATAATTCAAGCTTACCAAAAAGCATCTGGACAACTTGTTAACTTAGTAAAATCTGAAATGCTTTTTAGCAAAGGAGACACTGCTGACATTAAAGGGGAAGTATCTAGAATCTTGCCTATGCAAACTGTAGAGCACTTTTCAAAATATCTAGAGACTATCACGCAAGTTAATGGTACTGCAATTGCACAACCGATAGAGAGTCCAAGTTCACATGACCTGCAAATTTATGGGATTGTTGTGACTATTGTGTTATGCTTTATTTGGAAAAAGCTTAAAGGATGGAAGGAAAAAAATCTATCTTTTGCAGGAAGAGGCACTCTAATCAAGGCTGTGGCTCAAGCCATCCCTACATATATTATGAGCTGCTTTCTCATTCCTAAAGGGGTACGTGAACAACTTGAAAGAATGATATGTAACTTTTGGTGGGGAAGCACCACTGACCTCAGGAAAATACACTGGATAAAGTGGTCAAAGGATGACAAATGGATACAGCAAAAAGCTACTAGTTACAAGGTAAACCCTAGGCCTAATGATCTGAACCTCACCAAAGTCAAGGAGCTTATGGATAATAACTATCATGAATGGAATGAAACTATTATAAACCAAATTTTCCACCCTTATGATGCTCAAATGATACTAAATATACCTATCATTGACAAAACACAACCTGACACAATTACATGGGAAGGTACACAGGATGGACAATATTCAGTAAAGTCTGGCTATAATGCTATCATGAATTGGGGTAGTCTGTCAAATGCTACCTCTTCCAATAACACTCAACATATCTGGAGCACCCTTTGGAAGCTAAATGTACCCCCTAAGCACAGTCACCTACTTTGGAGAGCTCTAAAAAATGCCTTACCAGTGAAAGGCAATTTATTCAAAAGAGGGGTCAGATGTGAACCCTTATGCCCTCGATGCTCAAATACTACAGAAACAATCAATCATGTGTTCTTAGAATGTGAATGGGCAAAACAAGTATGGTTTGCCTCATCTTTGAATCTAAACCTAAGGCTCAACCAAATCTCTGAATTCTTCGACTGGATCAATTTTATGAAAAACAACACAGATAAAGAATGCATGGAGAAGATTACAGCTATCACCTATGGAATATGCTTCAATGCGTTGAACCAGATACAGGAATACCAGCTCTATGGCTTTGAGCAGCAAATCCAAAATCCGTGCGTGAGAACAAAAGGTTGCAATAACGATATAAGCTGGAGTCCACCACCTAGGGGCACCCTGAAGAACAATGTGGATGCTCACCTAAGCAGTGATGGCCATTGGTTAACAGGGATGATTCTAAGGAGGTCGGATGGGAGCGCCATCAGAGTTGCAACTAGGGCTCACAAAGGGACGACGGATGTAATAACAGGCGAAGCTTTTGGGCTAATGGATGCAATTGAATGGATCGAAAGGGGGATGGGAGAAAGGAAGGTGATATTTGAACTTGACTCGCAAATTGTTGTGAACGCTGTTAAAGAAAAGAGTGTGATTCGCAGAAGCTGGGGCTATATCACTCGGCGCTGCAAAACCTTCCTCCAAAACAACCCTAATTCGTCGATAGAATGGGTTCCAAGGGTGAAGAATCGGACTGCTCATGAAATTGCAATTTGGGCCGAATCAGAACCCAACAAAGAATGGATTGATAACATCTCACCTTGTATTCTGCCCTTTATCCAAAAAGATAAAGGCAATATTACTCCTTTTTCAGTTTATGTTTAA 2844 0.4023 MECEETWWKQRSRELWLKHGDKNTKYFHMKANIRRNKNKIEKITDSHGHTHTDDGGIEKVLVDHFKTWFTKQDAQAIPDTITVVKDRINTDMYQELNRHFTKEEVFQAIKDMKALAAPGPDGLPAIFYHTHWEVIGKEVTDMVLNVLNNNGDPSHLNNTYICLIPKINNPASPSDFRPISLCNVTLKIITKTIANRIKTILPDVISPNQSAFIQGRLITDNALIASEIFHYLAHTKRKNGHVGIKTDMTKAYDRVEWEFLEATMSIMGFPATMVQTIMKCVSTVKFSILINGYPSQEFYPQRGLRQGDPLSPYLFIICANVLSGLISRAQQEKLIHGVKISQGAPEISHLLFADDSLIFCRATSKEVSTIHEIIQAYQKASGQLVNLVKSEMLFSKGDTADIKGEVSRILPMQTVEHFSKYLETITQVNGTAIAQPIESPSSHDLQIYGIVVTIVLCFIWKKLKGWKEKNLSFAGRGTLIKAVAQAIPTYIMSCFLIPKGVREQLERMICNFWWGSTTDLRKIHWIKWSKDDKWIQQKATSYKVNPRPNDLNLTKVKELMDNNYHEWNETIINQIFHPYDAQMILNIPIIDKTQPDTITWEGTQDGQYSVKSGYNAIMNWGSLSNATSSNNTQHIWSTLWKLNVPPKHSHLLWRALKNALPVKGNLFKRGVRCEPLCPRCSNTTETINHVFLECEWAKQVWFASSLNLNLRLNQISEFFDWINFMKNNTDKECMEKITAITYGICFNALNQIQEYQLYGFEQQIQNPCVRTKGCNNDISWSPPPRGTLKNNVDAHLSSDGHWLTGMILRRSDGSAIRVATRAHKGTTDVITGEAFGLMDAIEWIERGMGERKVIFELDSQIVVNAVKEKSVIRRSWGYITRRCKTFLQNNPNSSIEWVPRVKNRTAHEIAIWAESEPNKEWIDNISPCILPFIQKDKGNITPFSVYV* 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1785 947 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 164 394 IPR000477 -
Tpr5g1785 947 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 145 433 IPR000477 -
Tpr5g1785 947 CDD RT_nLTR_like 159 422 - -
Tpr5g1785 947 CDD RNase_H_like 791 910 IPR044730 -
Tpr5g1785 947 Pfam Reverse transcriptase-like 803 911 IPR002156 GO:0003676|GO:0004523
Tpr5g1785 947 Pfam zinc-binding in reverse transcriptase 608 701 IPR026960 -
Tpr5g1785 947 SUPERFAMILY DNA/RNA polymerases 75 375 IPR043502 -
Tpr5g1785 947 Gene3D - 789 917 IPR036397 GO:0003676
Tpr5g1785 947 PANTHER - 531 614 - -
Tpr5g1785 947 PANTHER - 18 529 - -
Tpr5g1785 947 SUPERFAMILY Ribonuclease H-like 798 914 IPR012337 -
Tpr5g1785 947 PANTHER REVERSE TRANSCRIPTASES 18 529 - -
Tpr5g1785 947 PANTHER REVERSE TRANSCRIPTASES 531 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1785 Tpr-Chr5 36135479 36139903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1785 412 459 Inorganic Solute Cotransporters AT1G30450 58.182 3.89e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1785 - - cit:102617714 568.926