Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1772 ATGGCTTTGACTGTTGATAATCGTAATATGTTTTCAAACATTGATGAAATCAACTCTGATAGGGCAACTTGGAATTTTCAGGCTAAGGTCATAAGACTTTGGCAAGTGAATGATTTTAATCGAGTTAATGTTCCTTTTTCTATTGAAATGGTGTTAATGGATTCAGATGGTGCTAAGATTCATGCCACTATTAAAAAAACTCTGATTTACAAATTTAAACATGAGTTAATCGAGGGAAAAGTTTATTCTTTTGAAAATCTTGGTGTGGCAGCTAATACTGGAGCTTATAGGACAACACATCATCCTTACAAACTGAACTTTCAGTTTGGCTCATTGGTTCAGAGGCTGTCCAACTGTGATATTTTGAAGTCTCCATTTACCTTTGTTCCGATTGCTGATATTTTGGGGGGTTGTTATGACACTGATTTTTTACTTGATGTTATTGGTTTCTTGACTGAGATTGGGCAAGAACGTGGGATCACTAATCAGAATGGTAGTACAACGAAGCTGAATGTCATTGCATTGGAAGCTGATGGGCATAAACTTCAATGTACACTTTTTGGTCCATATGTTGATGAACTTAATACCTTTGTTGGAGCTGGTGATCTAACCAATGCTGTGGTTATTGTTCAGCTTGCTAAGGCTAAGATCTTCCAAGTTATTGATTGGGAAATTGTAGACAAGATACATATCCAGAATTGCATGAATTGTTCTGTTTTGATATTTAACCCAACTTGTGACGAAAGTGTAGCCTTAAGGGCAAGTCTCAATGGTTCTGATGAGAATCCGTCTCCATTGACCTTTACTCAAGTTAGCACAGAGTCAAGTGTTCAACCACTTGATGAGTTTCTGCACATTACTCCAAGGATTACCTTGCAAGGTCTCAAGGATGCTACAACTGAATCATCACATGTTGTTGCTGCAACTGTTAAGAGGACTTTAAATCCCAATAGTTATTGGTATACATCATGTTTGTGCGGCAAGGCTGTTGTGCCGGATTCAAAGATGTGGTATTGTGAAAAGTGTAACAGGCATGTTTCAAAGGTTGTTCCTAGGTTTTGTGTCAAAGTCAGAGTCATGGATGATACTGATTCTGCCATTTTTGTGATCTTTGACAAGGAAGCAAGTTCCATATTCAATATGTCTTGTGCTGATATGGTTCGAAATGGAGAAAATGATGTTGGTGAAAGAATTGTTCCACCTGAAATTGATGAGACACTGATTGATCAAACTTGGCTTTTTAAAGTTGAAGCTAAACCTTTTCAGAATCCTAGGTTTGAGCAATCTTTCTGTGTAAGAAAGATTTGTACCGATGAGGGTATAATTAAGCAATTTAAGGACAAGTGGGATAATGAGGATGCTGTGTATCTTAAAAATACAAATGAGGGTGGATCTTTGAGTACTTTGCTGGAAAAGGGGAAAGATGATTATGTAGTTGGGTCGTCAAACGTCCTTTCTGAGGAGTTTGAAAACTTTAGTGGAGATTCTGACAAGTCAAAAGGTTTGATTGTTGAGCGGTCAACTGTTGACGTATCACAAGATTTGATGATAAAATTTTCATCAGCTGTTGTTAATCTTGGCGATGATTTTGATAATACTCCTCTTTGTATTAAGCCAAATACATCCTCTAAGGTGAAACATATTTCATCTGCTGCTGTTGTCAACCCGAATACCGTTGTTGATGGTGTGAAGCCAATTCAACCTGATGATAATGCAAAGCCAATCAACTCTGTTGGATCTGTGAATCGAATCAACTCTGCTGGAGCTGCGAAGTCTCAACAATCTGCTGCTGTTATTGATGATTTGAGCCAGACAGCTTCAGCCTCTGTTAGGCCATCTTGA 1842 0.38 MALTVDNRNMFSNIDEINSDRATWNFQAKVIRLWQVNDFNRVNVPFSIEMVLMDSDGAKIHATIKKTLIYKFKHELIEGKVYSFENLGVAANTGAYRTTHHPYKLNFQFGSLVQRLSNCDILKSPFTFVPIADILGGCYDTDFLLDVIGFLTEIGQERGITNQNGSTTKLNVIALEADGHKLQCTLFGPYVDELNTFVGAGDLTNAVVIVQLAKAKIFQVIDWEIVDKIHIQNCMNCSVLIFNPTCDESVALRASLNGSDENPSPLTFTQVSTESSVQPLDEFLHITPRITLQGLKDATTESSHVVAATVKRTLNPNSYWYTSCLCGKAVVPDSKMWYCEKCNRHVSKVVPRFCVKVRVMDDTDSAIFVIFDKEASSIFNMSCADMVRNGENDVGERIVPPEIDETLIDQTWLFKVEAKPFQNPRFEQSFCVRKICTDEGIIKQFKDKWDNEDAVYLKNTNEGGSLSTLLEKGKDDYVVGSSNVLSEEFENFSGDSDKSKGLIVERSTVDVSQDLMIKFSSAVVNLGDDFDNTPLCIKPNTSSKVKHISSAAVVNPNTVVDGVKPIQPDDNAKPINSVGSVNRINSAGAAKSQQSAAVIDDLSQTASASVRPS* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1772 613 CDD RPA1_DBD_A_like 27 113 - -
Tpr5g1772 613 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 28 390 - -
Tpr5g1772 613 Pfam Replication factor-A C terminal domain 307 394 IPR013955 -
Tpr5g1772 613 SUPERFAMILY Nucleic acid-binding proteins 288 419 IPR012340 -
Tpr5g1772 613 Gene3D - 275 435 IPR012340 -
Tpr5g1772 613 MobiDBLite consensus disorder prediction 589 613 - -
Tpr5g1772 613 SUPERFAMILY Nucleic acid-binding proteins 126 258 IPR012340 -
Tpr5g1772 613 Gene3D - 9 115 IPR012340 -
Tpr5g1772 613 Gene3D - 119 264 IPR012340 -
Tpr5g1772 613 Pfam Domain of unknown function DUF223 49 142 IPR003871 -
Tpr5g1772 613 SUPERFAMILY Nucleic acid-binding proteins 11 117 IPR012340 -
Tpr5g1772 613 CDD RPA1_DBD_C 295 419 IPR013955 -
Tpr5g1772 613 PANTHER REPLICATION FACTOR A 1, RFA1 28 390 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1772 Tpr-Chr5 35894685 35897476 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1772 46 435 Core DNA Replication Machinery Family AT5G08020 23.614 1.89e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1772 - - mtr:MTR_4g036240 581.252