Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1770 ATGTTCAAATCGAATTCATGGCGCCACAAAACCCTAATCTATTATTATCTCAAGGGATTAACATTACAATCCCCAAACCCTAACCCTCTTTTCCACCGTTACCCATCGCAATTTTCTCTTCGTTACTGCACAAACACTTCCGATTCAACCCCATTTCCTGTCTCCTACCTCATCCGCAATTTTGAATTCTCACCACAATTTGCTTCCAAACTCTGCTCCACTTACAAAGTTTGTTTCAAAACTTCCCAAAACCCTGATTTAGTTCTCAACTTCTTTAGAAACTATGGTTTCTCAGATTCCCAATTACGTGATACCATTCAGAAGTCACCAGGGTTGCTTTCATGCAATCCCTCCAAAAGGGTGTTGCCAAAGTTTCAATTTTTTCTTTCCAAAGGTGCTTCTAAATCTGATATTGTTAACCTTGTCAGTAAAAATCCCAAAATCTTGTCTCCAAGCTTGAAGAATTTTATTATCCCAAACTATGAATTGCTTTATGGATTCTTGCAATCAGACAAGAAAACTATTGATTGTGTAATTGGCAATCCAATTTTACTTTGTGACCAAGGTGTGTCACGTAACATCACAATGCTGCTTGAAAATGGAGTGGCCAACTCAAACATTGCAAGATTGCTTCAGATCCGGAGTCGGGTATTCCTGTTCCGTGACTTGCTGAAATTTGTGGATGAAGTAAAGGTTTTGGGGTTTAATCCTTCGAAAGTAATTTTTTCCGTAGCATTGACTGCTAAAGCAACTGTAACCAAAACCTTGTGGAAGGAGAAAGTTGATGCCTTGAAGAAATGGGGTTGGTCTGATGAAGATGCTGTTGAAGCATTTAGAAAGAAACCTTATTGTATGTTAACATCCATTGACAAAATAAATTTAGTGATGAGCTTTTGGGTCAATCAGATGGGTTGGGATGCTATGGCCATTGCCAAAGTACCATATATTTTGTCACTAAGTTTGGAAAAAAGGATCATTCCGAGGGCTGCTGTTGTGCAATTTCTTCTCAATAAAGGTTTGTTTCATAAGAATGGAAGCTTAACGCATCCATTTGTACTGCCCGAGAAGTTGTTTCGTGATATGCTTAAAAAACGTTTTAAGAACGAGTCCTCTTATTTATTAAATTTGTATGAGGAAAAACTCAATCATGCATATACTGCGGACAAGACATGCATGTCATGA 1182 0.3807 MFKSNSWRHKTLIYYYLKGLTLQSPNPNPLFHRYPSQFSLRYCTNTSDSTPFPVSYLIRNFEFSPQFASKLCSTYKVCFKTSQNPDLVLNFFRNYGFSDSQLRDTIQKSPGLLSCNPSKRVLPKFQFFLSKGASKSDIVNLVSKNPKILSPSLKNFIIPNYELLYGFLQSDKKTIDCVIGNPILLCDQGVSRNITMLLENGVANSNIARLLQIRSRVFLFRDLLKFVDEVKVLGFNPSKVIFSVALTAKATVTKTLWKEKVDALKKWGWSDEDAVEAFRKKPYCMLTSIDKINLVMSFWVNQMGWDAMAIAKVPYILSLSLEKRIIPRAAVVQFLLNKGLFHKNGSLTHPFVLPEKLFRDMLKKRFKNESSYLLNLYEEKLNHAYTADKTCMS* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1770 393 SMART mt_12 103 134 IPR003690 GO:0003690|GO:0006355
Tpr5g1770 393 SMART mt_12 139 170 IPR003690 GO:0003690|GO:0006355
Tpr5g1770 393 SMART mt_12 275 306 IPR003690 GO:0003690|GO:0006355
Tpr5g1770 393 SMART mt_12 307 341 IPR003690 GO:0003690|GO:0006355
Tpr5g1770 393 PANTHER CGI-12 PROTEIN-RELATED 23 385 IPR003690 GO:0003690|GO:0006355
Tpr5g1770 393 Gene3D Transcription termination factor 3, mitochondrial 67 185 IPR038538 -
Tpr5g1770 393 Gene3D Transcription termination factor 3, mitochondrial 186 369 IPR038538 -
Tpr5g1770 393 Pfam mTERF 258 354 IPR003690 GO:0003690|GO:0006355
Tpr5g1770 393 Pfam mTERF 89 220 IPR003690 GO:0003690|GO:0006355
Tpr5g1770 393 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 23 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1770 Tpr-Chr5 35859879 35861858 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tpr5g1770 mTERF 6.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1770 K15032 - gmx:102663414 371.703