Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1761 ATGTTGAATATCCATAGCCACACAACCTTTCTCAATCTCAAAGCATTAACTTTCCCACCAACATCACTATCCCACAAAAACCTCTCATTACCATTTTCTCTGCATTTCTGCAACTACACTTCAGATTCAACTTCAGTTGCAGTCTCCTACCTCATCAACACTTTTAACTTCACCCCAAAATTTGCTTCCAAACTCTGCTCCACTTACAAGGTATGTTTCAAGACAACCCAAAACCCTGATTTAGTTCTCAACTTCTTTAGAAACAATGGTTTCTCAGAAACCCAATTACGTAATATCATTTCCAAAGCACCATGGCTACTTTCATGTGACCCCTTCATAAGGGTCGTCCCAAAGTTTGAATTTTTACTATCCAAAGGTGCATCGAAATCTGACATTGTTAACATTGTCAGTAAGAACCCTATGGTCTTGTCTCCAAGTTTGGAGAATCATATAATCCCAACCTATGAATTGCTTTATAGATTATTGCAATCAGACAAGACAACTATTGCTTGTGTAATTATAAATCCACATTTACTTAGTGACTATTCTGTGCCACAAAACATCACATTGTTGCTTCAGAATGGATTGACAGACACAAGCATTGCATTATTGCTTAGGAGGCAGTCTCGTATAACGTCTACGAATACACGTTGCATGCTGAAGTTGGTGGAGGAATTGAAGGATTTGGGTTTTAATCCTTCAACAATAACCTTTGCTATAGCATTGGAAGCCAAACTAACCGTAAACAAACCATTGTGGGAAGAGAAAGTTGGTGCCTTTAAGAAATGGGGTTGGTCTGATGAAGATGTCATGGTAGCATTTAGATTGCAGCCTCAATGTATGTTGGCATCTATTGATAAAATTAATTTAGTGATGGGTTTTTGGGTCAATGAGTTGGGTTGGGATGTGCTTCCCCTTGCAAAAAAACCATCGATTTTTTCAAATAATTTGGAAAAAAGGATCATTCCAAGGGCCCGTGTTGTGCAATATCTTTTGAAGAAAGGTTTGCGAAAAAAGAATGCAAGCTTAACTTATCCATTTGGAGTGTCTGAGGAGTTGTTTGTTGATAAGTTTATAAAACGTTATAAGGAGGAGTCTTCTTATCTATTAAAGTTGTATGAGGAAAAACCCGATCTTGCGTACACCACGGATAGAAATTGCATGTGA 1167 0.3779 MLNIHSHTTFLNLKALTFPPTSLSHKNLSLPFSLHFCNYTSDSTSVAVSYLINTFNFTPKFASKLCSTYKVCFKTTQNPDLVLNFFRNNGFSETQLRNIISKAPWLLSCDPFIRVVPKFEFLLSKGASKSDIVNIVSKNPMVLSPSLENHIIPTYELLYRLLQSDKTTIACVIINPHLLSDYSVPQNITLLLQNGLTDTSIALLLRRQSRITSTNTRCMLKLVEELKDLGFNPSTITFAIALEAKLTVNKPLWEEKVGAFKKWGWSDEDVMVAFRLQPQCMLASIDKINLVMGFWVNELGWDVLPLAKKPSIFSNNLEKRIIPRARVVQYLLKKGLRKKNASLTYPFGVSEELFVDKFIKRYKEESSYLLKLYEEKPDLAYTTDRNCM* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1761 388 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 20 380 - -
Tpr5g1761 388 SMART mt_12 202 232 IPR003690 GO:0003690|GO:0006355
Tpr5g1761 388 SMART mt_12 133 164 IPR003690 GO:0003690|GO:0006355
Tpr5g1761 388 SMART mt_12 97 128 IPR003690 GO:0003690|GO:0006355
Tpr5g1761 388 SMART mt_12 303 337 IPR003690 GO:0003690|GO:0006355
Tpr5g1761 388 SMART mt_12 271 302 IPR003690 GO:0003690|GO:0006355
Tpr5g1761 388 Pfam mTERF 182 354 IPR003690 GO:0003690|GO:0006355
Tpr5g1761 388 Pfam mTERF 83 236 IPR003690 GO:0003690|GO:0006355
Tpr5g1761 388 Gene3D Transcription termination factor 3, mitochondrial 170 372 IPR038538 -
Tpr5g1761 388 PANTHER CGI-12 PROTEIN-RELATED 20 380 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1761 Tpr-Chr5 35649582 35651800 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tpr5g1761 mTERF 2.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1761 K15032 - gmx:102663414 368.237