Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1760 ATGCTTCGTTACATCATCTTCAATTCCAACCATTACAAAACCCTAAACCCCCAAAAATCTTACCCTCTTTTCCCATTTCAATTTTCTCACAAATTCAAACTCTGCACCACCTCTTCAGATTCCGTGTCTGAATCAGAGTCATTCACTGTCTCCTACCTCATCAACAACATCGGTTTCACTCGTGAAAAAGCTCTCAAAGCTTCAAAACGAGTTCGTTTCAATTCTCCAGAAAAACCCAATTCAGCTTTCACTTTCTTCAGAAACTTCGGTTTTTCAGACACTGACATAAAGAAAATCTGCATAAAAGAACCATGGCTTCTTACTTCAGATACCCACAATTCAATTCTTCCAAAGATTGAATTTTTCCTATCCAAAGGTGCTTCAATGTCTGAAATCTCTCGGCTTTTAACGGCGAGCCCTAGAATTTTACAATTTAGTTTGGAGAATCGAATTATCCCTCATTTTGAATTTTATAATAGGATTTTGAAATCTGATAAAGCTACAATTTGTTGCATGATTCGACATTCGATTCTTTTGGCTTACAATCTTGTGCCTGTTAATGTTAAGTTGTTGATTGATTATGGTGTTTGTGATTCCAGTATTGTTAAATTGCTTTTGACAAGACCAACTATACTTGGTTCAATTGATTTGATCAAGTCTTTGGAGGAAGTTAAGGGTTTAGGGTTTAACCCTTCAACTTCCACTTTTGGGATAGCTTTGGTTGCAAAGAAATGTATGAGTAAAACACGGTGGAATGAGAAAGTTGTTGCCTTTAAGAAATGGGGTTGGTCTGATGAAGATATTGTGGAATCATTTAGGTTGCAGCCTAATTTGATGTTGTCTTCAGTTGATAAGATTAATTTGGTGATGAGTTTTTGGGTCAATCAATTGGGTTGGAATTCCTTGGCACTTACTAGAAAGCCGCAAATTTTCGGTTTTAGTTTGCAGAAAAGGATTATTCCGAGGGCATTAGTTGTGCAATATCTTCAGATGAAAGGTTTGAGGAAAAATTATGCAAGCTTAGTTACACCGTTTTTTTGGTCTGAGGAACTGTTCTTGCGCAAATATGTTTACTGTTTTAAGGAAGAGTCTGATTATTTATTAAAGCTTTATGAGGAAAACATGAATCATGCATACACCACGGAGAACATTGAAATGTCATTCATCAAATAG 1173 0.3606 MLRYIIFNSNHYKTLNPQKSYPLFPFQFSHKFKLCTTSSDSVSESESFTVSYLINNIGFTREKALKASKRVRFNSPEKPNSAFTFFRNFGFSDTDIKKICIKEPWLLTSDTHNSILPKIEFFLSKGASMSEISRLLTASPRILQFSLENRIIPHFEFYNRILKSDKATICCMIRHSILLAYNLVPVNVKLLIDYGVCDSSIVKLLLTRPTILGSIDLIKSLEEVKGLGFNPSTSTFGIALVAKKCMSKTRWNEKVVAFKKWGWSDEDIVESFRLQPNLMLSSVDKINLVMSFWVNQLGWNSLALTRKPQIFGFSLQKRIIPRALVVQYLQMKGLRKNYASLVTPFFWSEELFLRKYVYCFKEESDYLLKLYEENMNHAYTTENIEMSFIK* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1760 390 PANTHER CGI-12 PROTEIN-RELATED 20 380 IPR003690 GO:0003690|GO:0006355
Tpr5g1760 390 SMART mt_12 301 335 IPR003690 GO:0003690|GO:0006355
Tpr5g1760 390 SMART mt_12 97 128 IPR003690 GO:0003690|GO:0006355
Tpr5g1760 390 SMART mt_12 202 230 IPR003690 GO:0003690|GO:0006355
Tpr5g1760 390 SMART mt_12 133 164 IPR003690 GO:0003690|GO:0006355
Tpr5g1760 390 SMART mt_12 269 300 IPR003690 GO:0003690|GO:0006355
Tpr5g1760 390 Pfam mTERF 188 352 IPR003690 GO:0003690|GO:0006355
Tpr5g1760 390 Pfam mTERF 85 213 IPR003690 GO:0003690|GO:0006355
Tpr5g1760 390 Gene3D Transcription termination factor 3, mitochondrial 184 369 IPR038538 -
Tpr5g1760 390 Gene3D Transcription termination factor 3, mitochondrial 49 183 IPR038538 -
Tpr5g1760 390 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 20 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1760 Tpr-Chr5 35631078 35634689 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tpr5g1760 mTERF 1.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1760 K15032 - gmx:102667698 348.591