Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1758 ATGTTCAGGAATTTGTTTCTCTCCCACAATCTTGTTTTAGGTATCATCAATACCCCTAAATTTCACCCTTTTATCCAACACTTTTCCTTCCCATTTGTACCCTCCACATTCTGCACAACAACATCAAAATCAGAATCAGAATCAGACGCACACTCATTTGCTGTATCCTATCTCATCAACAATTTTGGTTTCTCAACTCAATCAGCTCTCAAAGCTTTCAACCAAAAACAGGTTCGTTTCAAATCTCCAGATAAACCTAATTCAGTTATCAACTTCTTTAAAAACCATGATTTTTCAGACTCCAAGATACGCATCATCATTAGAAAATCACCGAGGTTACTTTCAGCAGAACCCCATAAAAACTTATTGCCAAAGTTTCAATTTTTTCTATCCAAAGGTGTTTCTTCATCTGATATTGTTTCAATGTTGACAGCAAACCCTGAAATTTTACAATTTAGTTTGGAGAAACGAATAATCCCTCGTTTTGAATCATTAAGTAGGTTCTTGAAAACCGACAAGGATGCCATCGTTTGCTTAATTCGACAATGGTATTCATTTGATCCAATTTCATATGACCACGCTGTGGCTAATATCAATTTGATGACTGATTTTGGAGTTTGTGATTCTGCCATTGCTACATTGGTTCAAACAAGGTCATCTATATTTGGTTCAACTGATTTTATTAAGACATTGGAGGAAATTAAGGGTTTAGGGTTTCGTCCTTCAACGACTACTTTTGGGATTGCTTTGTCAGCCAAAGGTTTGGGTGTAAAACTTTGGGATGAGAAAGTTAATGCCTTTAAGAAGTGGGGTTGGTCTGATGAAGATGTTCTTAAAGCATTTAGACAGAAGCCTCAATGTATGTTAGTATCCGTTGATAAAATTAATTTAGTGATGAGCTTTTGGGTCAATCAGTTGGGTTGGGATGCTATGGCCATTGCCAAAACACCGCATATTTTGTCGTTAGGTTTGGAAAAAAAGATCATTCCGAGAGCCGCAGTTGTGCAATATCTTCTTAGTAAAGGTTTGAGAAAGAAGAGTGCAAGCTTAACTTGTCCATTTATAATTCAAGAGAAGATGTTTCTTGATAAGTTTATAAAACGTTTCAAGGACAATTCCGATTATATATTAAGGTTGTATGAGGAAAAAAAACTCAATCATACATAG 1167 0.3573 MFRNLFLSHNLVLGIINTPKFHPFIQHFSFPFVPSTFCTTTSKSESESDAHSFAVSYLINNFGFSTQSALKAFNQKQVRFKSPDKPNSVINFFKNHDFSDSKIRIIIRKSPRLLSAEPHKNLLPKFQFFLSKGVSSSDIVSMLTANPEILQFSLEKRIIPRFESLSRFLKTDKDAIVCLIRQWYSFDPISYDHAVANINLMTDFGVCDSAIATLVQTRSSIFGSTDFIKTLEEIKGLGFRPSTTTFGIALSAKGLGVKLWDEKVNAFKKWGWSDEDVLKAFRQKPQCMLVSVDKINLVMSFWVNQLGWDAMAIAKTPHILSLGLEKKIIPRAAVVQYLLSKGLRKKSASLTCPFIIQEKMFLDKFIKRFKDNSDYILRLYEEKKLNHT* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1758 388 PANTHER CGI-12 PROTEIN-RELATED 22 385 IPR003690 GO:0003690|GO:0006355
Tpr5g1758 388 Pfam mTERF 262 352 IPR003690 GO:0003690|GO:0006355
Tpr5g1758 388 Pfam mTERF 90 221 IPR003690 GO:0003690|GO:0006355
Tpr5g1758 388 SMART mt_12 140 171 IPR003690 GO:0003690|GO:0006355
Tpr5g1758 388 SMART mt_12 278 309 IPR003690 GO:0003690|GO:0006355
Tpr5g1758 388 SMART mt_12 104 135 IPR003690 GO:0003690|GO:0006355
Tpr5g1758 388 SMART mt_12 310 344 IPR003690 GO:0003690|GO:0006355
Tpr5g1758 388 Gene3D Transcription termination factor 3, mitochondrial 189 372 IPR038538 -
Tpr5g1758 388 Gene3D Transcription termination factor 3, mitochondrial 55 186 IPR038538 -
Tpr5g1758 388 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 22 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1758 Tpr-Chr5 35624688 35626082 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tpr5g1758 mTERF 4.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1758 K15032 - gmx:102663414 333.954