Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1750 ATGCCCACCGAATGTTGTTTAGGGTTCATCAAAACAAACCCTAATTTCGACCCTCTTTCTCAAAAACACTCTTCGTTCCCAATTTCACTCAGATTCAAATGCTGCACCGCAACACCAACAACAACAATAACAATAACAGCATCAGAATCAAAATCAAAATCAAAATCAGACAGGTACCCATTCCCTGTATCATATCTCATCAACAATTTCGATTTCTCACCTGAATCAGCTCTCAAATATTTCAACAACGGCCATCTTGGTTTCAATACCGTTGAAAAACCTAATTCAGTTATCAACTTCTTTCTTAACAATGGATTTTCACATTCCGACATACGCATCATCATCAGAAAATCACCATCGTTACTTTCATCAAGACCCCATAAAAGGTTATTGCCAAAGTTTGAATTTTTTCTATCCAAAGGTGTTTCTTCATCTGATTTTGTTCCATTGTTAACTGCAAACCCTCAAATTTTACGAAGTAGCTTGGAGAACCGAATAATCCCTCTTTTTGAATTATTAAGTAAGTTCTTGAAAACCAACAAGGATATCATTGCTTGCTTAATTATATGTTCGCAATTATCGGCTCATCCCTGTGAACGTATTGTGGCTAATATCAATTTGTTGACTGATTTTGGAGTTTGTAATTCTGCCATTGCAAGATTGTTTAAAACAAGGCCGTCTATATTTGGTTCAACTGATTTGATTAAGTCTTTGGAGGAAGTTAAGGGTTTAGGGTTTGATCCTTCAGTGATTAATTTTGGGATAGCTTTGATGGCCAAGAAAGGTATGAGTGAAAAACTTTGGGATGAGAAAGTTGATACCTTCAAGAAATGGGGTTGGTCTGATGAAGTTGTTTCTCGTGCATTTAGGTCACATCCTGCTGTTATGTTGGTTTCAATTGATAAGATTAATTTGGTGATGAGTTTTTGGGTTAATCAATTGGGTTGGAATTCCTTGGCAATTACTAAAAAGCCACTTGTTTTAAGTTATAGTTTGGAGAAAAGGATCATTCCAAGGGCATTAGTTCTGCAATATCTTCTGATGAAAGGTTTGAGAAAAAAGGATGCAAGCTTAGTTAACCCATTTAATTATACTGAGGATTTGTTTTTGGACAAGTTTGTTTTCTCCTTTAAAGAGGAATCTGATTATCTATTAAAGCTATATGAGGAAAAAATGAAACTTGCAAATACAAAGGAGAAAAAGGGCATGCCATCCACCACATGA 1224 0.3554 MPTECCLGFIKTNPNFDPLSQKHSSFPISLRFKCCTATPTTTITITASESKSKSKSDRYPFPVSYLINNFDFSPESALKYFNNGHLGFNTVEKPNSVINFFLNNGFSHSDIRIIIRKSPSLLSSRPHKRLLPKFEFFLSKGVSSSDFVPLLTANPQILRSSLENRIIPLFELLSKFLKTNKDIIACLIICSQLSAHPCERIVANINLLTDFGVCNSAIARLFKTRPSIFGSTDLIKSLEEVKGLGFDPSVINFGIALMAKKGMSEKLWDEKVDTFKKWGWSDEVVSRAFRSHPAVMLVSIDKINLVMSFWVNQLGWNSLAITKKPLVLSYSLEKRIIPRALVLQYLLMKGLRKKDASLVNPFNYTEDLFLDKFVFSFKEESDYLLKLYEEKMKLANTKEKKGMPSTT* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1750 407 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 46 397 - -
Tpr5g1750 407 Gene3D Transcription termination factor 3, mitochondrial 166 386 IPR038538 -
Tpr5g1750 407 Pfam mTERF 98 229 IPR003690 GO:0003690|GO:0006355
Tpr5g1750 407 Pfam mTERF 263 369 IPR003690 GO:0003690|GO:0006355
Tpr5g1750 407 PANTHER CGI-12 PROTEIN-RELATED 46 397 IPR003690 GO:0003690|GO:0006355
Tpr5g1750 407 SMART mt_12 219 247 IPR003690 GO:0003690|GO:0006355
Tpr5g1750 407 SMART mt_12 148 179 IPR003690 GO:0003690|GO:0006355
Tpr5g1750 407 SMART mt_12 112 143 IPR003690 GO:0003690|GO:0006355
Tpr5g1750 407 SMART mt_12 286 317 IPR003690 GO:0003690|GO:0006355
Tpr5g1750 407 SMART mt_12 318 352 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1750 Tpr-Chr5 35461217 35462937 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tpr5g1750 mTERF 1.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1750 K15032 - gmx:102663414 320.857