Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1748 ATGATAATTAAGAAAGTTCAACTGCATGCCAAAACTTTTAAGGAAATGTATAATCTTAGAATAATTGAATTCATGGATCTGGATTTTCTTAGTGTCGACAGAAATGTGACCTTTCGTGCATATCTTGATAGTCTTCCGAATTCTTTAAGAATTCTTCATTGGATGGCCTTCCCTCAAAGATCTTTGCCACAAGACTTTTGTCCAGAAAATCTTGTCACTCTTGAAATGTGTTACAGCCATCTTGAACAACTTTGGGAAGAGGATCAGGTTTTATCAAATTTGAAAAGGCTTAACCTTAGCCGTTCTCGGAAGCTAAAACGACTACCAGACCTCTCTTTGTGTCCAAATATTGAAGAAATAATTCTTAGTGATTGTGAAAGTTTGGTAGAAGTTTACTCCTTTAACTTCCTCGACAAGCTTAACTGGTTATGTTTAGATGGTTGTAAGAAACTTGAGAGGCTAGATATTCATAGCAATATTCTATCGAGATCATCTGGATTAGTTGCTCTTCATGGTTGTCACAACCTTAAAACGCTTTTAATCAACAATAGAACTAATGTGGTTCAATTATATGGTGGGCCTCCTTTTAATCTAGTCATATCAGTATGTGTTTTTTATGATCAAATATTATTATTCCATGGTTGTTTAAAGTGGAAGGAGTTACCTGAAATCAAGGACACTGCAGAAAATCTAGAAGTGGTCATCTTAGACGAAACTGCAATAAAAGAACAACCTTCATCCTTACACTGTTTGGTTGGGCTTGAAGAATTGAGCTTGCAAAGATGCACAAAACTTAAGACTATTCCATCTTCCATTGGAAATCTCAGAAAACTCCTCAAGTTAAACCTTGCCTATTGTGTATCACTTGAGACTTTTCCAAGCACCATTTTCAAATTGAATTTGACAGAACTCGATTTTCAGGGTTGCTCAATGCTTAAAACCTTTCCAGAGATCTTGGAACCTGTAGAAAGCTTTACTCACATTAACTTAACAAAAACGGCAATAAAAGAACTACCTTCATCCTTGCATCTTTTGGTCGGGCTTGAAGAATTGAGTTTGCAAAGTTGCACAAAACTTAAGACTATTCCATCTCCCAGTGGAAATCTCAGTAAACTTCTCAAGTTAAACCTTGCTGATTGTGTATCACTTGAAACTTTCCCAAGCAGCATTTTCAAATTAAAGTTGACAAAGCTCGATTTTGAGGATTTGCCTTCATCAATTGAGTATTTAGTTGGGCTTCAAACATTGAACCTAAAACTTTGCAGTAACCTAGTCTCACTTCCAAACAACATTGGTTGCTTGTCATCCTTGACAGAACTTTCACTCGAAGGAAGTAGTATTGTGAACCTTCCCAAGAGTATCGCTCATCTCTCAAGTTTGAAATCACTTAATTTAAGTGATTGCAAACGGCTTGAATGTGTTCCAAAGCTTCCACCAAATCTAAACCAAGTTTTGGCATTTGATTGCCCTTCCATTCAGATAATGGTGCTAAATTCGTGGTCTGATTTCGAAGAAGGTACCTTCAAATTTCATCTCACCAATAGTCAAAAACTAGATGCCACTTCCTTGAGTATTATTGAAGAGGAAGCATGTACTAAGATCAATGATCATTTATATTTGGCTGAATAG 1629 0.3622 MIIKKVQLHAKTFKEMYNLRIIEFMDLDFLSVDRNVTFRAYLDSLPNSLRILHWMAFPQRSLPQDFCPENLVTLEMCYSHLEQLWEEDQVLSNLKRLNLSRSRKLKRLPDLSLCPNIEEIILSDCESLVEVYSFNFLDKLNWLCLDGCKKLERLDIHSNILSRSSGLVALHGCHNLKTLLINNRTNVVQLYGGPPFNLVISVCVFYDQILLFHGCLKWKELPEIKDTAENLEVVILDETAIKEQPSSLHCLVGLEELSLQRCTKLKTIPSSIGNLRKLLKLNLAYCVSLETFPSTIFKLNLTELDFQGCSMLKTFPEILEPVESFTHINLTKTAIKELPSSLHLLVGLEELSLQSCTKLKTIPSPSGNLSKLLKLNLADCVSLETFPSSIFKLKLTKLDFEDLPSSIEYLVGLQTLNLKLCSNLVSLPNNIGCLSSLTELSLEGSSIVNLPKSIAHLSSLKSLNLSDCKRLECVPKLPPNLNQVLAFDCPSIQIMVLNSWSDFEEGTFKFHLTNSQKLDATSLSIIEEEACTKINDHLYLAE* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1748 542 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 360 504 - -
Tpr5g1748 542 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 92 360 - -
Tpr5g1748 542 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 301 401 - -
Tpr5g1748 542 SUPERFAMILY L domain-like 25 183 - -
Tpr5g1748 542 Gene3D Ribonuclease Inhibitor 397 540 IPR032675 -
Tpr5g1748 542 Pfam Leucine Rich Repeat 70 89 IPR011713 -
Tpr5g1748 542 PANTHER - 360 504 - -
Tpr5g1748 542 PANTHER - 301 401 - -
Tpr5g1748 542 PANTHER - 92 360 - -
Tpr5g1748 542 SUPERFAMILY L domain-like 209 500 - -
Tpr5g1748 542 Gene3D Ribonuclease Inhibitor 208 396 IPR032675 -
Tpr5g1748 542 Gene3D Ribonuclease Inhibitor 4 190 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1748 Tpr-Chr5 35432953 35435382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1748 274 504 WRKY Transcription Factor Family AT4G12020 31.092 1.09e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1748 - - lja:Lj3g3v0423790.1 416.772