Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1746 ATGTTGAAAGCTTTTCTATGCTACAATGCTTTTGGCATATCAACAACAACACTCTACAACTATTCACCCTCCCAATTTTCTGTAAAATGCCTCACCACTACCACCACTCCACCATCAAATTCATTCTCACCAGAATCTGCAATCAAAGCTTCCAATAAAGTCATTTTCAAGACCTCTAAAAAATCAGAATCAGTTATCAACTTCTTCAGGACCCACGGTTTTACAGATTCAGATATACAACACATCATCCAAAAAGAACCATGGCTTCTTAACTGCAACCCCAGCAAAAGGTTATTGCCAAAGTTTCAATTTTTACTCTCCAAAGGTGCTTCTACCTCTGATATTGTTCGTATAACTGTTGCTGGTCACAGGTTCATGATGTTAAGCTTGAAGAATCTTGAAAATAAGTTTGAATTTTTTCTATCCAAAGGTGTTTCTTCCTCTGATATTGTTTCATTGTTAATTGCAAACCCTATGATTTTACAAATTAGCTTGGAGAAACGAATAATCCGTCTTTTTGAATTGTTAAGTAGGTTCTTGAAAACCAACAAGGATGTCATTGTTTGCTTAATTCGACATTCAAAAGCTTTTAATTTTATTCCCTATCATCTTATGGTAGCTAACATCAATTTGATGACTGATTTTGGAGTTTGTGATTCTAACATTGCTAGATTCCTTCAAATAAGGCCGTATATATTTGGTTCAACTGATTTGATTAAGTCATTGGAGGAAGTTAAGGGCTTAGGGTTTGATCCTTCAAGGACTACTTTTGGGGCTGCTTTGATAGCCAAGAAATTTTTGAGTGAAGAACTTTGGGATGAGAAAGTTGATACCTTTAAAAAATGGGGTTGGTCAGATGAAGATATTGTTAAAGCATTTAGGGTTAAGCCTGATCTTTTGTTGAATTCCGTCGATAAGATTAATTTGGTGATGAGTTTTTGGGTTAATGAAATGGGTTGGAATTCCCTGGCACTTACTAAAAAGCCACATATGTTTGGTTATAGTTTGGAGAAAAGGATCATTCCAAGGGCCTCAGTTCTGCAATTTCTTCTGATGAAAGGTTTGCGAGAAAAGAATGCAAGCTTAGTTAACCCATTTAAGTATTCTGAGGATTTGTTTTTGGAAAAGTTTGTTTTTTCCTTTAAGGAGGAGTCTGATTATCTATTAAAGCTATATCAGGAAAAAATCAAACTTGCAAAGACAAAGGAGAAAAATGGCATGCCATCCACGAATCTTGTTCTTTTGTGA 1248 0.3534 MLKAFLCYNAFGISTTTLYNYSPSQFSVKCLTTTTTPPSNSFSPESAIKASNKVIFKTSKKSESVINFFRTHGFTDSDIQHIIQKEPWLLNCNPSKRLLPKFQFLLSKGASTSDIVRITVAGHRFMMLSLKNLENKFEFFLSKGVSSSDIVSLLIANPMILQISLEKRIIRLFELLSRFLKTNKDVIVCLIRHSKAFNFIPYHLMVANINLMTDFGVCDSNIARFLQIRPYIFGSTDLIKSLEEVKGLGFDPSRTTFGAALIAKKFLSEELWDEKVDTFKKWGWSDEDIVKAFRVKPDLLLNSVDKINLVMSFWVNEMGWNSLALTKKPHMFGYSLEKRIIPRASVLQFLLMKGLREKNASLVNPFKYSEDLFLEKFVFSFKEESDYLLKLYQEKIKLAKTKEKNGMPSTNLVLL* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1746 415 Pfam mTERF 66 373 IPR003690 GO:0003690|GO:0006355
Tpr5g1746 415 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 131 401 - -
Tpr5g1746 415 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 41 132 - -
Tpr5g1746 415 PANTHER CGI-12 PROTEIN-RELATED 131 401 IPR003690 GO:0003690|GO:0006355
Tpr5g1746 415 PANTHER CGI-12 PROTEIN-RELATED 41 132 IPR003690 GO:0003690|GO:0006355
Tpr5g1746 415 Gene3D Transcription termination factor 3, mitochondrial 141 390 IPR038538 -
Tpr5g1746 415 SMART mt_12 290 321 IPR003690 GO:0003690|GO:0006355
Tpr5g1746 415 SMART mt_12 151 182 IPR003690 GO:0003690|GO:0006355
Tpr5g1746 415 SMART mt_12 322 356 IPR003690 GO:0003690|GO:0006355
Tpr5g1746 415 SMART mt_12 80 111 IPR003690 GO:0003690|GO:0006355
Tpr5g1746 415 SMART mt_12 223 251 IPR003690 GO:0003690|GO:0006355
Tpr5g1746 415 SMART mt_12 116 146 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1746 Tpr-Chr5 35423924 35426875 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tpr5g1746 mTERF 4.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1746 K15032 - gmx:102667698 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1746 5 35423924 35426875 Tpr5g1746 5 35423924 35426875 ECH