Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1744 ATGTTCAAACCATTTCTCTTCCACAATGCTTTTCGCTTATCAACAACAACACTGCACCATTCAAGCTTCCAATTTTCTCTCAGATTCCTCACCACTCCACCCTCACACCCATTCGCTGTATCTTATCTCATCGACAAATTCGGTTTCTCATCAGAATTCGCTTTCAAAGCTTCGAAAACCCTTCATTTCAAAACCTCAAAAAACCCTGATTCAGTTCTCAATGTCTTCACAACTTACGGTTTCACTGATTCAGATATTCAAAACATCATCAGAAGAGAACCTTGGCTTCTTTCCTGTGATGCCCAAAAAAGAATTCTCCCAAAGTTTCAATTTTTACTATCGAAAGGCGCTTCTAATTCCGACATTGTTCGTATGGTTGTAGGTAACCCTAGATTCATGAGATCGAGTTTGAATAATCGTGTTATCCCTGTTTATAAATTGGTAACTCGATTTCTTAAATCGGAACAAAAGGCTATTGCTTCTGTAATTTCACTTCCTTATTTACTTTGTTGTGATTATGTGATTCCTAATGTTAATTTAATGGTTGATAAGGGTGTTTGCGATTCGAGTATTGCTAAAATTATTTGTAGCCATATTATATTTTGTAAGCCTAGGGTTTTTGAGGAAATGGTGGAGGAGTTGAAAAACATGGGATTTGATCCTTCTAAAATATATTTTGGTGATGCATTGCTCGCTAAGTTAGGTTTAAGTAAATCTAAATGGGATGCAAAAATTGATACTTTTAAGAAATGGGGTTGGTCTGAGGAAACTATTTTGGAAGCTATTAGGAAGCAGCCGAAATGTATGTTAGCTTCGACCGATAAAATCAATAGAGTGATGCAGTTTTGGGTTAATGATTTAGGTTGGGATTCTTCTTATCTTGCTAAGGGACCGGGGATGTTTTCTTATGCCTTGGAAAAAAGGATCGTTCCAAGAGCTATGGTTGTCATTTGTCTTCAAACTACGGGTTTGAGAAGTGAGAGTGCTAGCTTGCTTTCTCCATTTTATGTGTCTGAGAAAGTATTTTTGGAAAGATTTGTGTTATGTTTTAAAGAGGAAGAAACTGCTCATTTATTGAATTTATATCGCACTATGATGAAGGTGGGAGATGAGAAGGTAAGTAGCATAGGAGAATCATGA 1140 0.3658 MFKPFLFHNAFRLSTTTLHHSSFQFSLRFLTTPPSHPFAVSYLIDKFGFSSEFAFKASKTLHFKTSKNPDSVLNVFTTYGFTDSDIQNIIRREPWLLSCDAQKRILPKFQFLLSKGASNSDIVRMVVGNPRFMRSSLNNRVIPVYKLVTRFLKSEQKAIASVISLPYLLCCDYVIPNVNLMVDKGVCDSSIAKIICSHIIFCKPRVFEEMVEELKNMGFDPSKIYFGDALLAKLGLSKSKWDAKIDTFKKWGWSEETILEAIRKQPKCMLASTDKINRVMQFWVNDLGWDSSYLAKGPGMFSYALEKRIVPRAMVVICLQTTGLRSESASLLSPFYVSEKVFLERFVLCFKEEETAHLLNLYRTMMKVGDEKVSSIGES* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1744 379 Gene3D Transcription termination factor 3, mitochondrial 156 356 IPR038538 -
Tpr5g1744 379 SMART mt_12 291 325 IPR003690 GO:0003690|GO:0006355
Tpr5g1744 379 SMART mt_12 123 154 IPR003690 GO:0003690|GO:0006355
Tpr5g1744 379 SMART mt_12 259 290 IPR003690 GO:0003690|GO:0006355
Tpr5g1744 379 SMART mt_12 87 118 IPR003690 GO:0003690|GO:0006355
Tpr5g1744 379 SMART mt_12 192 220 IPR003690 GO:0003690|GO:0006355
Tpr5g1744 379 Pfam mTERF 234 342 IPR003690 GO:0003690|GO:0006355
Tpr5g1744 379 Pfam mTERF 73 223 IPR003690 GO:0003690|GO:0006355
Tpr5g1744 379 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 12 370 - -
Tpr5g1744 379 PANTHER CGI-12 PROTEIN-RELATED 12 370 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1744 Tpr-Chr5 35373228 35374367 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tpr5g1744 mTERF 3.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1744 K15032 - gmx:102666739 322.783