Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1743 ATGTTATATATACAGTACATCAAACTATACACAATATACTTAATTCACTCACTCTCCATGGCTAGAACAAATTCTACCAAGCACTCAATCCATTTCTTCAAGATCATCCTCCAAACTAATCTTCAAAGACTTAAAATACCAAATAAGTTTACAAAGAGTCATGGAGTTGGTTTATCAAATCCAGTGTTGATCAATCCTCCTGATGGCACTAAATGGAAAGTTTATTGGAAAAATATCAATGGTGAGATTTGGTTTGAAAAGGGTTGGAAATCTTTTACTCAAAATTACTCTCTAGGACATGGCAGTTTGGTTGTGTTTAAATATAAAGAAGGAACTTCCAAGTTCGATGTACTCATACTTGGCCAAAGTGCAGTAGAAATAGACTATGATCCTTCATCTGACACTCATGATGATGATGATAAAAATGACAATGTTGGTGATAGTAATGATGATGAACCAGTTAAGATTTTGGATGAAAATAGTGACGATGAATCAGTTATGATTTTGGATGAATTAAGTTCTCCTCGACCACATAAAAAAGTCAGAGGTGAGACTGAAAACATTACTAAAAGGACTTCATCACTAAATATGCCAAAGGAAGCTAGAGCTCAGGAAATTGCTGAAAACTTCATCTCAAGCAATCCCTTTTTCACAATTCTTATAAATACTTATCACGTGGTCGAAAGTCATCAGCTGGGTGTACCAAGTTTAAAGGGGGTTATTGAGAACAAAGGGAAGGATGTGATGTTGCAGATTGGAAAAAGATCATGGAATGTGAAACTGCTTCGTTGTTCCGAGAATACAAATACTCGTCGCCTCTCAGCGGGTTGGCGCTTGTTTCTACGTGAAAGTGGACTGAAACCGGGAGATGTTTGTGTCTTTGAACTGATAAACAAGAATGATTTAATTTTTAAAGTTCACGTTTTCTAA 930 0.3581 MLYIQYIKLYTIYLIHSLSMARTNSTKHSIHFFKIILQTNLQRLKIPNKFTKSHGVGLSNPVLINPPDGTKWKVYWKNINGEIWFEKGWKSFTQNYSLGHGSLVVFKYKEGTSKFDVLILGQSAVEIDYDPSSDTHDDDDKNDNVGDSNDDEPVKILDENSDDESVMILDELSSPRPHKKVRGETENITKRTSSLNMPKEARAQEIAENFISSNPFFTILINTYHVVESHQLGVPSLKGVIENKGKDVMLQIGKRSWNVKLLRCSENTNTRRLSAGWRLFLRESGLKPGDVCVFELINKNDLIFKVHVF* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1743 309 SUPERFAMILY DNA-binding pseudobarrel domain 212 309 IPR015300 -
Tpr5g1743 309 Gene3D - 23 124 IPR015300 -
Tpr5g1743 309 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 24 309 - -
Tpr5g1743 309 MobiDBLite consensus disorder prediction 130 160 - -
Tpr5g1743 309 PANTHER B3 DOMAIN-CONTAINING 24 309 - -
Tpr5g1743 309 Pfam B3 DNA binding domain 226 308 IPR003340 GO:0003677
Tpr5g1743 309 Pfam B3 DNA binding domain 39 116 IPR003340 GO:0003677
Tpr5g1743 309 ProSiteProfiles B3 DNA-binding domain profile. 217 309 IPR003340 GO:0003677
Tpr5g1743 309 ProSiteProfiles B3 DNA-binding domain profile. 29 123 IPR003340 GO:0003677
Tpr5g1743 309 SUPERFAMILY DNA-binding pseudobarrel domain 30 130 IPR015300 -
Tpr5g1743 309 Gene3D - 196 309 IPR015300 -
Tpr5g1743 309 CDD B3_DNA 31 120 IPR003340 GO:0003677
Tpr5g1743 309 MobiDBLite consensus disorder prediction 176 196 - -
Tpr5g1743 309 CDD B3_DNA 215 309 IPR003340 GO:0003677
Tpr5g1743 309 SMART B3_2 216 307 IPR003340 GO:0003677
Tpr5g1743 309 SMART B3_2 32 123 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1743 Tpr-Chr5 35302049 35304331 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1743 32 309 B3 DNA Binding Superfamily AT3G18990 25.749 3.57e-29 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr5g1743 B3 4.7e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1743 - - mtr:MTR_3g061330 319.701