Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1709 ATGGAGTCATCGGTTCATTTGTTACCACCAGCTAAACGCACAGCTTCAACTGGAATTTCATCTGAGGAAGAATATAAAAAACTTAAATTATCAAGTGATACCTTGCCGCATTCAGCACATGGCAATGTTGTAGATTACAAAAATCCGGATGTAATCTCAGATGTTATACATCGTTTAGAGAGTGGAAAATATGGAAGCGTAACAAAGGATATTGAAGCCCTTATAACCCAAAAAATGCAAACATTGGGCCCTTACTTTGCAAAATATCCTATTCTTATCAATAAATTATTGAAAGTGGTGTCGAATCATGAGGAAGAAAATCACAACCCAGAGAATAAAAAAGTAACGGGTATGTCGAATCACAATGTTATAGATTTGGATTTGGATGAGGGGGACATTGAAAGGGATGTTTTGGCACCAAAAAGAGAAAAGAATGTTCCTGCAGCACCATTTCCTGTTGTTATCATTGATTCAGATGAGGAAGATGATAGGGATCAAACATGTTTTCTTCCATTTCATGAAGTTATATTGCCGAAACCAGTTCAGTCTCCTGCAATAAAAAGAATTGGATATCATGCTCCCTATAGTTACCCTGGAGGAAGTGCAGCTCTAGCACTTGAAACAAGTCTGCCTCCTAAAGATAACATAAAGAAAGATAAAGGTGTTCATGTTGGTGTACACGAGGAAGAAGATAATAAGGGCTATCATGCTCCCAATGCCTACAATGGAGGAAGTGTAGTTGTAGCACTTGAAACAAGTCCGCCTCCTAAAGATAACATAAAGAAAGATAAAGGTGGTTATGTTGGTGTGCACAAGGAAGAAGATAACCAGGGCTATCATGCTCCCAATGCTTACCATGGAGAAAGTGCAGATCTAAAATTTGAAACAAGTCTGCCTCCTAAAGATAACACAAAGAAAGATACAGGTGTTTATGTTGGTGTACAAGAGGAAGAAAATAATGAGGTGGATGCTGAAGATGATGGGCTGGAAGATATTTGGAGGGAGATGTCTCTGGCGATAGAAACTTCTAAAGATGTTTCTAACGACCAGCCACCTGAAGAAGAGGAAGAAGATCCTGACTGTGATCATTCTTTTGTTTTAAAAGACGACCTCGGTTATGTTTGTCGCGTTTGTGGGGTTATTGACAGAGGAATTGAAACCATATTTGAGTTCCAATACAAGGTTAAAAGGAGCACAAGAACTTATATGTCTGAACCGGGGAATGCCAAAGAAAAAGCAGATATATTTGGAGTTAAGATTGCTAAAGATGATCTCATGGTAACTGAAATATCAGCACATCCTCGGCATGCAAATCAAATGAAACCGCACCAAGTTGAAGGATTCAATTTTCTTGTCAGAAACCTGGCGGGGGACCATCCTGGGGGATGTATTCTGGCTCACGCTCCAGGATCTGGAAAGACATTCATGATTATCAGTTTCGTGCAGAGTTTTCTAGGAAAGTATCCCAATGCACGACCTCTGGTGGTGCTTCCTAAGGGAATACTGTCGACTTGGAAAAAAGAGTTTCAGACATGGCAAGTGGAAGATGTACCACTTTATGACCTTTACACTGTGAAGGCTGACAATAGATCACAACAATTGGAAGTCTTAAAACAGTGGGTGGATAAGAAGAGCATCCTTTTTTTAGGATACCAACAGTTTTCTTCCATTATCCGTGATAACTGTAATAGCAATGCATCAATATCTTGCCAAGATATATTGCTTAAGGTTCCCTCAATTCTCATTTTAGATGAAGGACACACCCCCAGGAATGAGAATACTGATATTGTACAGTCGCTTGCAAAAGTACACACACCAAGAAAAGTTGTACTGTCTGGAACCCTATATCAAAATCATGTTAAGGAGGTATTTAACGTGCTTAACCTTGTTCGCCCAAAGTTTTTAAAGATGGAAACATCTAAGCATATTGCCCGACGCATTAAGAGTAGAATCCTTATATCTGGTGGGAATGACTTCTGTGAATTGGTTGAAAAGACTTTGCAAACGGACCCAGATTTTAAAAGGAAAGTGGCTGTTATACATGATTTGCGGGAGATGACTGGCAAGGTACTGCACTACTATAAAGGAGATTTTCTTGATGAGCTTCCTGGCCTAGTAGATTTTACTGTGTTGCTCAATCTTACACCTAGACAGAAGCATGAAGTTGATAAAATGAAGACGAAGTATAAAAAGTTTAAGATGTCTTCTGTAGGGAGTGCAGTATATCTGCACCCAAAATTGGCACCGATTGCAGATAAATGGGATGAAAATTCTATATCTGATGTTGATCGTATAATGGATGATCTAATAGTGAACCTCGATGTGAGAGATGGTGTTAAATCAAAATTCTTTCGCAATATGCTGAACCTATGCGAATCAAGTGGGGAGAAGCTTTTGGTGTTCAGTCAATACCTCCTGCCTCTGAAATATTTAGAAAGGTTAGCAAAGAAATGGAAGGGATGGGGTCTTAACAAAGAAATTTTTGTGATTTCAGGAGATTCAACCACTGAACAAAGGGAGTGCGCCATGGAAAACTTTAACAATTCACCTGATGCCAAAATATTTTTTGGGTCCATCAAAGCTTGTGGCGAGGGTATATCATTGGTTGGGGCATCCCGGATCATCATCTTAGACGTCCATCTTAATCCCTCTGTTACTCGTCAAGCTATTGGCCGTGCTTTCCGGCCAGGCCAGAAAAGGAAAGTGTTTGTTTATCGATTGATAGCTGCTGATTCTCCAGAAGAGCAAGATCACAGTACTTGTTTCAAGAAAGAATTAATTTCAAAAATGTGGTTTGAATGGAATGAATATTGTGGTGACAGAGCATTTGAAGTTGAAACAGTTGATGTGAAGGAATGCGGTGACCTGTTTCTAGAAAGTCCATTGTTAGGGGAAGACGTAAAAGCTCTGTATAAAAGGTAA 2922 0.3946 MESSVHLLPPAKRTASTGISSEEEYKKLKLSSDTLPHSAHGNVVDYKNPDVISDVIHRLESGKYGSVTKDIEALITQKMQTLGPYFAKYPILINKLLKVVSNHEEENHNPENKKVTGMSNHNVIDLDLDEGDIERDVLAPKREKNVPAAPFPVVIIDSDEEDDRDQTCFLPFHEVILPKPVQSPAIKRIGYHAPYSYPGGSAALALETSLPPKDNIKKDKGVHVGVHEEEDNKGYHAPNAYNGGSVVVALETSPPPKDNIKKDKGGYVGVHKEEDNQGYHAPNAYHGESADLKFETSLPPKDNTKKDTGVYVGVQEEENNEVDAEDDGLEDIWREMSLAIETSKDVSNDQPPEEEEEDPDCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYMSEPGNAKEKADIFGVKIAKDDLMVTEISAHPRHANQMKPHQVEGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFVQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDVPLYDLYTVKADNRSQQLEVLKQWVDKKSILFLGYQQFSSIIRDNCNSNASISCQDILLKVPSILILDEGHTPRNENTDIVQSLAKVHTPRKVVLSGTLYQNHVKEVFNVLNLVRPKFLKMETSKHIARRIKSRILISGGNDFCELVEKTLQTDPDFKRKVAVIHDLREMTGKVLHYYKGDFLDELPGLVDFTVLLNLTPRQKHEVDKMKTKYKKFKMSSVGSAVYLHPKLAPIADKWDENSISDVDRIMDDLIVNLDVRDGVKSKFFRNMLNLCESSGEKLLVFSQYLLPLKYLERLAKKWKGWGLNKEIFVISGDSTTEQRECAMENFNNSPDAKIFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKRKVFVYRLIAADSPEEQDHSTCFKKELISKMWFEWNEYCGDRAFEVETVDVKECGDLFLESPLLGEDVKALYKR* 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1709 973 Pfam SNF2-related domain 460 674 IPR000330 GO:0005524|GO:0140658
Tpr5g1709 973 MobiDBLite consensus disorder prediction 1 20 - -
Tpr5g1709 973 CDD SF2_C_SNF 780 908 - -
Tpr5g1709 973 Gene3D - 703 960 IPR027417 -
Tpr5g1709 973 PANTHER PROTEIN CHROMATIN REMODELING 35 21 973 - -
Tpr5g1709 973 MobiDBLite consensus disorder prediction 343 362 - -
Tpr5g1709 973 Gene3D - 408 669 IPR038718 -
Tpr5g1709 973 Pfam Helicase conserved C-terminal domain 788 896 IPR001650 -
Tpr5g1709 973 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 454 633 IPR014001 -
Tpr5g1709 973 SMART ultradead3 436 643 IPR014001 -
Tpr5g1709 973 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 783 951 IPR001650 -
Tpr5g1709 973 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 429 650 IPR027417 -
Tpr5g1709 973 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 21 973 IPR044567 GO:0080188
Tpr5g1709 973 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 579 935 IPR027417 -
Tpr5g1709 973 SMART helicmild6 812 897 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1709 Tpr-Chr5 34113867 34121282 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1709 794 925 RAD5 or RAD16-like Gene Family AT5G43530 37.121 2.40e-15 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr5g1709 SNF2_N 2.5e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1709 K10875 - gmx:100795356 1192.95