Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1701 ATGGAGTCATCGGTTCATTTGTTACTACCACCAGCTAAACGCACAGCTTCAACTGGAATTTCATCTGAGGAAGAATACAAAAAACTTAAATTATCAAGTGATACCTTGCCGCATTCAGCACATGGCAATGTTGTAGATTACAAAAATCCGGATGTAATCTCAGATGTTATACATCGTTTAGAGAGTGGAAAATATGGAAGCGTAACAAAGGATATTGAAGCCCTTATAACCCAAAAAATGAAAACATTGGGCCCTTACTTTGCAAAATATCCTATTCTTATCAATAAATTATTGAAAGTGGTGTCGAATCATGAGGAAGAAAATCACAACCCAGAGAATAAAAAAGTTACTGGTATGTCGAATCACAATGTTATAGATTTGGATTTGGATGAGGGGGACATTGAAAGGGATGTTTTGGCACCAAAAAGAGAAAAGAATGTTCCTGCAGCACCATTTCCTGTTGTTATCATTGATTCAGATGAGGAAGATGATAGGGATCAAACATGTTTTCTTCCATTTCATGAAGTTATATTGCCGAAACCAGTTCAGTCTCCTGCAATAAAAAGAATTGGATATCATGCTCCCTATAGTTACCCTGGAGGAAGTGCAGCTCTAGCACTTGAAACAAGTCTGCCTCCTAAAGATACCATAAAGAAAGATAAAGGTGTTCATGTTGGTGTACACGAGGAAGAAGATAATAAGGGCTATCATGCTCCCAATGCTTACAATGGAGGAAGTGTAGTTGTAGCACTTGAAACAAGTCCGCCTCCTAAAGATAACATAAAGAAAGATAAAGGTGGTTATGTTGGTGTGCACAAGGAAGAAGATAACCAGGGCTATCATGCTCCCAATGCTTACCATGGAGAAAGTGCAGATCTAAAATTTGAAACAAGTCTGCCTCCTAAAGATAACACAAGGAAAGATAAAGGTGTTTATGTTGGTGTACAAGAGGAAGAAAATAATGAGGTGGATGCTGAAGATGATGGGCTGGAAGATATTTGGAGGGAGATGTCTCTGGCGATAGAAACTTCTAAAGATGTTTCTAACGACCAGCCACCTGAAGAAGAGGAAGAAGATCCTGACTGTGATCATTCTTTTGTTTTAAAAGACGACCTCGGTTATGTTTGTCGCGTTTGTGGGGTTATTGACAGAGGAATTGAAACCATATTTGAGTTCCAATACAAGGTTAAAAGGAGCACAAGAACTTATATGTCTGAACCGGGGAATGCCAAAGAAAAAGCAGATATATTTGGAGTTAAGATTGCTAAAGATGATCTCATGGTAACTGAAATATCAGCACATCCTCGGCATGCAAATCAAATGAAACCGCACCAAGTTGAAGGATTCAATTTTCTTGTCAGAAACCTGGCGGGGGACCATCCTGGGGGATGTATTCTGGCTCACGCTCCAGGATCTGGAAAGACATTCATGATTATCAGTTTCGTGCAGAGTTTTCTAGGAAAGTATCCCAATGCACGACCTCTGGTGGTGCTTCCTAAGGGAATACTGTCGACTTGGAAAAAAGAGTTTCAGACATGGCAAGTGGAAGATGTACCACTTTATGACCTTTACACTGTGAAGGCTGACAATAGATCACAACAATTGGAAGTCTTAAAACAGTGGGTGGATAAGAAGAGCATCCTTTTTTTAGGATACCAACAGTTTTCTTCCATTATCCGTGATAACTGTAATAGCAATGCATCAATATCTTGCCAAGATATATTGCTTAAGGTTCCCTCAATTCTCATTTTAGATGAAGGACACACCCCCAGGAATGAGAATACTGATATTGTACAGTCGCTTGCAAAAGTACACACACCAAGAAAAGTTGTACTGTCTGGAACCCTATATCAAAATCATGTTAAGGAGGTATTTAACGTGCTTAACCTTGTTCGCCCAAAGTTTTTAAAGATGGAAACATCTAAGCATATTGCCCGACGCATTAAGAGTAGAATCCTTATATCTGGTGGGAATGACTTCTGTGAATTGGTTGAAAAGACTTTGCAAACGGACCCAGATTTTAAAAGGAAAGTGGCTGTTATACATGATTTGCGGGAGATGACTGGCAAGGTACTGCACTACTATAAAGGAGATTTTCTTGATGAGCTTCCTGGCCTAGTAGATTTTACTGTGTTGCTCAATCTTACACCTAGACAGAAGCATGAAGTTGATAAAATGAAGACGAAGTATAAAAAGTTTAAGATGTCTTCTGTAGGGAGTGCAGTATATCTGCACCCAAAATTGGCACCGATTGCAGATAAATGGGATGAAAATTCTATATCTGATGTTGATCGTATAATGGATGATCTAATAGTGAACCTCGATGTGAGAGATGGTGTTAAATCAAAATTCTTTCGCAATATGCTGAACCTATGCGAATCAAGTGGGGAGAAGCTTTTGGTGTTCAGCCAATACCTCCTGCCTCTGAAATATTTAGAAAGGTTAGCAAAGAAATGGAAGGGATGGGGTCTTAACAAAGAAATTTTTGTGATTTCAGGAGATTCAACCACTGAACAAAGGGAGTGCGCCATGGAAAACTTTAACAATTCACCTGATGCCAAAATATTTTTTGGGTCCATCAAAGCATGTGGCGAGGGTATATCATTGGTTGGGGCATCCCGGATCATCATCTTAGACGTCCATCTTAATCCCTCTGTTACTCGTCAAGCTATTGGCCGTGCTTTCCGGCCAGGCCAGAAAAGGAAAGTGTTTGTTTATCGATTGATAGCTGCTGATTCTCCAGAAGAGCAAGATCACAGTACTTGTTTCAAGAAAGAATTAATTTCAAAAATGTGGTTTGAATGGAATGAATATTGTGGTGACAGAGCATTTGATGTTGAAACAGTTGATGTGAAGGAATGCGGTGATCTGTTTCTAGAAAGTCCATTGTTAGGGGAAGACGTAAAAGCTCTGTATAAAAGGTAA 2925 0.3942 MESSVHLLLPPAKRTASTGISSEEEYKKLKLSSDTLPHSAHGNVVDYKNPDVISDVIHRLESGKYGSVTKDIEALITQKMKTLGPYFAKYPILINKLLKVVSNHEEENHNPENKKVTGMSNHNVIDLDLDEGDIERDVLAPKREKNVPAAPFPVVIIDSDEEDDRDQTCFLPFHEVILPKPVQSPAIKRIGYHAPYSYPGGSAALALETSLPPKDTIKKDKGVHVGVHEEEDNKGYHAPNAYNGGSVVVALETSPPPKDNIKKDKGGYVGVHKEEDNQGYHAPNAYHGESADLKFETSLPPKDNTRKDKGVYVGVQEEENNEVDAEDDGLEDIWREMSLAIETSKDVSNDQPPEEEEEDPDCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYMSEPGNAKEKADIFGVKIAKDDLMVTEISAHPRHANQMKPHQVEGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFVQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDVPLYDLYTVKADNRSQQLEVLKQWVDKKSILFLGYQQFSSIIRDNCNSNASISCQDILLKVPSILILDEGHTPRNENTDIVQSLAKVHTPRKVVLSGTLYQNHVKEVFNVLNLVRPKFLKMETSKHIARRIKSRILISGGNDFCELVEKTLQTDPDFKRKVAVIHDLREMTGKVLHYYKGDFLDELPGLVDFTVLLNLTPRQKHEVDKMKTKYKKFKMSSVGSAVYLHPKLAPIADKWDENSISDVDRIMDDLIVNLDVRDGVKSKFFRNMLNLCESSGEKLLVFSQYLLPLKYLERLAKKWKGWGLNKEIFVISGDSTTEQRECAMENFNNSPDAKIFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKRKVFVYRLIAADSPEEQDHSTCFKKELISKMWFEWNEYCGDRAFDVETVDVKECGDLFLESPLLGEDVKALYKR* 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1701 974 Gene3D - 409 670 IPR038718 -
Tpr5g1701 974 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 430 651 IPR027417 -
Tpr5g1701 974 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 455 634 IPR014001 -
Tpr5g1701 974 PANTHER PROTEIN CHROMATIN REMODELING 35 22 974 - -
Tpr5g1701 974 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 580 936 IPR027417 -
Tpr5g1701 974 SMART helicmild6 813 898 IPR001650 -
Tpr5g1701 974 CDD SF2_C_SNF 781 909 - -
Tpr5g1701 974 Pfam Helicase conserved C-terminal domain 789 897 IPR001650 -
Tpr5g1701 974 SMART ultradead3 437 644 IPR014001 -
Tpr5g1701 974 MobiDBLite consensus disorder prediction 344 363 - -
Tpr5g1701 974 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 784 952 IPR001650 -
Tpr5g1701 974 Gene3D - 704 960 IPR027417 -
Tpr5g1701 974 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 22 974 IPR044567 GO:0080188
Tpr5g1701 974 Pfam SNF2-related domain 461 675 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1701 Tpr-Chr5 33850398 33857980 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1701 795 926 RAD5 or RAD16-like Gene Family AT5G43530 37.121 2.57e-15 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr5g1701 SNF2_N 2.5e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1701 K10875 - gmx:100795356 1195.65