Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1686 ATGACTGTAACTGAAGTTGAAAGCATGCTGGTGAGCAAAGGGATTGTTGATGGTTCAAATTCAGGTGTTAGATTTGATGTGGCTTCATCCACGAATCAGAGCAACTTTGAAAATGAAGAGTCAGATCCAGAGATTAGGAAACTGGTGCATGACAGCATCACAGTATTTTTCTTTGCAAAAGAAGGTAACGGTTGTGTCCTTAACTCGACTAGGGAAAATACTTTTGCACCTGTTACTATCAATTTCCAGCATAGTCTTGGCCAGAAGTTTAGACACCCATATGGAACTGGTATCACTCTTTCAATGTTCGAGGAATCCAAGTTGTTGAAAGTGGGCGACCTAGACGTCTATCCTGTAGCAGTTAAAGCAGATGCATCTTTCGGTGACATGAACGGAACAAATGAAACTCCAACATCTGGTAATAAAACAAACACAAACTCTCAGATAACTCGAGCAGTGTTTGAGAAGGAGAAAGGAGAATTCTGGGTGAAGGTTGTTAAGCAGATATTGTGCAGGAGATATATGGTATTGGAACTTCAAATGATGCTGATCTTAGCCGGTGATATCACTAATACTAATGCTAAATCATTGGGAAATGTTAAATGA 606 0.3977 MTVTEVESMLVSKGIVDGSNSGVRFDVASSTNQSNFENEESDPEIRKLVHDSITVFFFAKEGNGCVLNSTRENTFAPVTINFQHSLGQKFRHPYGTGITLSMFEESKLLKVGDLDVYPVAVKADASFGDMNGTNETPTSGNKTNTNSQITRAVFEKEKGEFWVKVVKQILCRRYMVLELQMMLILAGDITNTNAKSLGNVK* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1686 201 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 49 183 - -
Tpr5g1686 201 PANTHER MAHOGUNIN 49 183 IPR045194 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1686 Tpr-Chr5 33447990 33450307 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1686 49 180 C3H Transcription Factor Family AT3G09770 46.269 1.58e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1686 - - aprc:113862864 168.318