Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1680 ATGCGTTCGTTTTCATCCAAACGCAGTGACTTCGCAAAACGCGGTGACTTTGTCTTCTTCGTCTTCGTCCCACAAATCCCAAATCGTGTGACTTCGAAATCCCAAATCGTCGCCACCTCTCTTCCTCTCTCTCTCGGTGTTTCCGATTCAGGTTCGTTCACAATTCGGTGTTTCAGATTCAGCTCTGATTTCACCTTCAAGCTGCAGATTCATTCTTCCTCATCAACCTTCAAGCTTCAGATTCATTCTCTGATTTCACCTTCGTTCACCCTTCTCCTCAAATTCGTTCCACCTTCAGCTTCAATCTTCATAATTCAGGCTGAGAAGATTGGATTGGAATCCATGGATGTAGAAGCCTTGAAGAAGCTCAACAAAAACAAGAAGTTGGTGAAGAAACTCGCCAAAAAATATCAGGCTTTCTTAGCATCTGAGGCTGTCATTAAGCAGATTCCTCGGCTTTTGGGTCCTGGACTCAATAAGGCAGGAAAGTTCCCAACTCTTGTTTCTCACCAGGAATCTCTCGAAGGAAAGGTTAATGAGACCATGCTCTTCATGGGAGTAGCCGTTGGTAAAGCTAGCATGGAGAGCTTTATCATTCCAAGAGAGTCAAATTCTATCTGTCTGATAATTCACATGAGAATAATAAAATGCTGA 654 0.4327 MRSFSSKRSDFAKRGDFVFFVFVPQIPNRVTSKSQIVATSLPLSLGVSDSGSFTIRCFRFSSDFTFKLQIHSSSSTFKLQIHSLISPSFTLLLKFVPPSASIFIIQAEKIGLESMDVEALKKLNKNKKLVKKLAKKYQAFLASEAVIKQIPRLLGPGLNKAGKFPTLVSHQESLEGKVNETMLFMGVAVGKASMESFIIPRESNSICLIIHMRIIKC* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1680 217 Gene3D - 100 183 IPR016095 -
Tpr5g1680 217 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 106 201 - -
Tpr5g1680 217 PANTHER 60S RIBOSOMAL PROTEIN L10A-1-RELATED 106 201 - -
Tpr5g1680 217 SUPERFAMILY Ribosomal protein L1 105 195 IPR023674 -
Tpr5g1680 217 Pfam Ribosomal protein L1p/L10e family 108 180 IPR028364 -
Tpr5g1680 217 ProSitePatterns Ribosomal protein L1 signature. 147 166 IPR023673 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1680 Tpr-Chr5 33045175 33049238 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1680 104 196 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 76.699 2.32e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1680 K02865 - oeu:111373161 131.339