Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1666 ATGAAGAAGTCTTTTGATCCTTCATTTTTTGGTCCTTCCAAGATTCCACCAATAAGTATATCTGGAACGTCAGGTCATGGTGCATTGGAAGTTTTATCTGGATCTGATTCATTTCATACTTCATCCGATGCTAGTCTCTTTTCCAGCTCATTACCTGTTCTTCCACACGAAAAATTGAACTTAAATGAAACTGAAAATGGTTTTCAATCCGTTGATGATATCTCAACTAGCTTTAAAAAGCTTCATCAAGAAGAAGAGCTCAATGATTCCCTTGAAGATAGTAATAATCATGCAATCGGAACCATGCTTCCTGATGACGACGATGAGCTTTTGGCTGGCATAATGGATGATTTTGACCTAAGCGGTTTACCTGGTTCCCTTGAGGACTTGGAAGAGTATGATATTTTTGGTAGTGGTGGTGGTTTGGAACTAGAAACTGATGCACAAGAAAATCTCAGTGTGGGAATATCTAAGTTAAGCTTCTCTGATAGCTCTGTTAGCAATGGTTTGCCCCCTTATTCTCTACCCAATGGCTTGGGAGGCGGATCCGTTGCTGGCGAACATCCATATGGAGAGCATCCTTCTCGGACATTGTTTGTTCGAAATATTAACAGTAATGTGGAGGATACAGAGCTGCGTATTCTTTTTGAGCAATATGGTGATATTAGAACCCTATATACTGCCTGTAAACACAGGGGGTTTGTAATGATATCGTATTATGACATCCGTGCTGCTCGAACAGCCATGCGTGCATTACAAAACAAACCTTTGCGGCGAAGGAAACTTGATATTCACTTTTCAATACCAAAGGATAATCCATCAGACAAGGATATCAATCAAGGAACCTTGGTAGTTTTCAATTTGGATCCATCTGTTTCAAATGAAGACCTCCGCCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAGTTTATTGAATATTATGATGTCAGAGCTGCAGAAGCAGCACTTAAATCATTAAATAGGTGTGACATTGCTGGTAAACGCATAAAGCTTGAACCAAGTCGACCTGGAGGAGCTCGTCGCAATTTGATGCTCCAACTGAATCAAGAGCTTGACCAAGACGAGTCTCGAAGTTTTCGATATCAAGTGGGTTCACCTCTGGCCAACTCTCCGCCAGGTAATTGGTTACAGTTCAGCAGCCCTGTCGACCAGAGTTCATTGCCAACTGTCAATCATTCTCCTGGTTCCAGCATCATGAGCCCAACAACCCGCTCTAATTTACCTGGATTAGCTTCAATTTTGCAACCACAGGTATCTAACGCAGCAAAGACCACAACTCTTGGCAAGGATATAGGAAGGAGTAGTCATGGAAACCACATATTTTCCAATACGAGTTCATCCTCTGGATCTACTTTCAACTCACATTCACTTCCAGAGCCAAAATTTAGTCAATATCGTGGAACTTTGTCCTCGTTTGGTGCATCAACATCAAATGGGTCTTCGGTAGAAACCTTGACTGCTCCACAGTTTCTATGGGGAAGTCCAAACTTATCCTCAGCGCAAACCAAACCTTCGGCTTGGCAAAGACCATCCGTGGGGCATCAACTTAGTACATTGAATGGAACGAGTCATGCTTTCCCATACTCAAGTCAGAGCAATTCCTTTGTCAGTTCGTCCCAGCAACATCATCATCACATTGGTTCTGCTCCATCAGGTTTGCCTTTTGAGAGGCACTTCGGTTTTTTCCCCAAGTCATCTGAAACTTCATTGATGAATAATGTTGGCTATAGTGGCATGAGTCTAGGGCACAATGATGGAAATTACTTGCTTAATGCTGCAATTTCTGGTAATGCCGACGTTTCTATTCCAAGAAATATGGCTAATAATGGTTCCTCAAACTTCAGAATGAGATCTTCTCCTATACTTAGCCCGGTGTTTTTGGGTAATGGTCCTTATCCAAGAGTTTTACCTACTGCTATGGAGAGTTTATCTGACCGTGTTAGGAGTAGATGGATTGATAACAATGGTAGCCAAGTTGACAGCAAGAAGCTATTTCAGCTCGACTTGGATAAGATCAAAAGTGGTGAAGATACGAGGACTACATTGATGATAAAGAATATCCCAAATAAATACACCTCAAAAATGTTGTTGGCTGCCATTGATGAATATCACAAGGGCACCTATGATTTTCTCTATCTGCCAATTGACTTTAAGAATAAATGCAATGTCGGTTATGCATTTATCAACATGCTGTCACCCTCGCATATTATTCCATTCTTCGAGACATTCAACGGGAAGAAGTGGGAGAAATTTAATAGTGAAAAAGTTGCTTCTTTGGCTTATGCTCGAATCCAAGGGAAGAATGCCCTTGTGAACCATTTCCAAAATTCAAGTTTGATGAATGAAGATAAGCGCTGCCGACCTATCGTCTTCCACTCAGATGGTTCTGAAGCTGGTGATCAGGCCATACATGAGCATATCCCCTCCAACTACAACAATATTCAGGCAGTTAAGTCAAGTGAGTTACAATTAAGAGATTCGCTCGGATTTCCTACAAAGGACGGTTTTCATGTGAATTTGGATGCAAATTAA 2586 0.4138 MKKSFDPSFFGPSKIPPISISGTSGHGALEVLSGSDSFHTSSDASLFSSSLPVLPHEKLNLNETENGFQSVDDISTSFKKLHQEEELNDSLEDSNNHAIGTMLPDDDDELLAGIMDDFDLSGLPGSLEDLEEYDIFGSGGGLELETDAQENLSVGISKLSFSDSSVSNGLPPYSLPNGLGGGSVAGEHPYGEHPSRTLFVRNINSNVEDTELRILFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEYYDVRAAEAALKSLNRCDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRSFRYQVGSPLANSPPGNWLQFSSPVDQSSLPTVNHSPGSSIMSPTTRSNLPGLASILQPQVSNAAKTTTLGKDIGRSSHGNHIFSNTSSSSGSTFNSHSLPEPKFSQYRGTLSSFGASTSNGSSVETLTAPQFLWGSPNLSSAQTKPSAWQRPSVGHQLSTLNGTSHAFPYSSQSNSFVSSSQQHHHHIGSAPSGLPFERHFGFFPKSSETSLMNNVGYSGMSLGHNDGNYLLNAAISGNADVSIPRNMANNGSSNFRMRSSPILSPVFLGNGPYPRVLPTAMESLSDRVRSRWIDNNGSQVDSKKLFQLDLDKIKSGEDTRTTLMIKNIPNKYTSKMLLAAIDEYHKGTYDFLYLPIDFKNKCNVGYAFINMLSPSHIIPFFETFNGKKWEKFNSEKVASLAYARIQGKNALVNHFQNSSLMNEDKRCRPIVFHSDGSEAGDQAIHEHIPSNYNNIQAVKSSELQLRDSLGFPTKDGFHVNLDAN* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1666 861 PANTHER RNA RECOGNITION MOTIF-CONTAINING 4 855 - -
Tpr5g1666 861 CDD RRM1_MEI2_like 195 271 IPR034453 -
Tpr5g1666 861 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 262 IPR000504 GO:0003723
Tpr5g1666 861 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 348 IPR000504 GO:0003723
Tpr5g1666 861 CDD RRM3_MEI2_like 700 785 IPR034454 -
Tpr5g1666 861 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 269 IPR000504 GO:0003723
Tpr5g1666 861 Gene3D - 280 379 IPR012677 -
Tpr5g1666 861 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 354 IPR000504 GO:0003723
Tpr5g1666 861 PANTHER PROTEIN MEI2-LIKE 2 4 855 - -
Tpr5g1666 861 SUPERFAMILY RNA-binding domain, RBD 699 784 IPR035979 GO:0003676
Tpr5g1666 861 SMART rrm1_1 699 775 IPR000504 GO:0003723
Tpr5g1666 861 SMART rrm1_1 282 350 IPR000504 GO:0003723
Tpr5g1666 861 SMART rrm1_1 197 265 IPR000504 GO:0003723
Tpr5g1666 861 Pfam RNA recognition motif 2 697 793 IPR007201 -
Tpr5g1666 861 Gene3D - 185 279 IPR012677 -
Tpr5g1666 861 SUPERFAMILY RNA-binding domain, RBD 193 356 IPR035979 GO:0003676
Tpr5g1666 861 CDD RRM2_MEI2_like 280 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1666 Tpr-Chr5 32843776 32851544 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1666 191 389 Eukaryotic Initiation Factors Gene Family AT1G71770 26.009 1.05e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1666 - - gmx:100800877 1368.6