Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1647 ATGTCGACTGAAGTACCGGATGAAGTTGATACTGATGAAATTGAACTTCTTACAAATGTTGATTTCCCTCAAATATTTGATAGTGATGATGATGCTTATAATTTTTACTCTTCGTTTGCACAAAGAAGTGGTTTCTCAATTAGACGTCATCACGTTTATAGAAACACTACTGATGAGGGAAATCCACAAACAGTTTACAAAAGAGAGTTCGTTTGCCATCGATCCGGGGTTTCTAAACCAGTCAAAGTTAATGAACTGGAAAGTCAAAGGAAACGGAAAGCTTCAAGGTGTAGTTGGAACACATTATTTGGGCATTTGAATTTCCTAGCTTTTGTCAAAGGAAAGAATCCACAAACAATTCTTACAGATCAAGATCCCTCGCTTAAAGAAGCTATTGCAAATGAATTTCCGAACACAAAACATGCATTTTGCATATGGCACATCTTGGCAAAGTTGCCAAGTTGGTTTTCGTTTGTATTAGGTGCAAGATATAATGACTTTAAATCTGAGTTTTTCAAGGTGTACCATTTAGATTGTGAAGATGATTTTGAACAATATTGGAAATCCATGGTTGCACAATTTGGTCTAAGTAACGATATACATATTAAATTGTTGTATTCTCTTCGCCAACGATGGGCTCTACCTTATTTGAAGGACTTTTTTTTTGCTGGGATGACAACAACTGGACGTTCGGAATCGATAAATTCATATATAAAACACTTCTTGGATGCCAAAACAAGTTTGACTGATTTTATTACTAGGGTTGGTGTTGCTGTCCAAATTAGGAATCAAGTTGGAGAGGAAGCAAGAATGCGTCAAAAGTATCATAATCATCTACTTAAAACAAGTTTTCCAATGGAGGAACATGTTGCATCTATACTCACACCTTATGCTTTTGGGTTGATTCAAATTGAGATTGAGTTATCTACAAAATACGCTGCAACTGAAACAAACAGTGGCTCTTTTATTGTGAAGCATCACACCAAAGATGATGGAGGTCGTCTTGTAACTTGGATAGAAGGTCAAGAATCAATTCGTTGCTCTTGTAAGGAATTTGAGTTTTCTGGAATATTGTGCAGGCATGCTATTCGAGTGCTTCTAATGAAAAATTATTTTCACATACCTTCAAAGTATCTTCCTTTTCGATGGAGACGTGAAAGTTCATTGATCCCAAGATCTAGGCACATAGTAAACAACAATGATGTCTCCTCTTCTGAGTTTCATTCTCTGATTCAATGTCTTGAATATGAATCTTTAAAAACAAAAGAACGGAAACAAATTGCTACTAAAGGGTTGGAGGATCTTATCCGAGAGATAAAAGGAATGTCCGAAAGTCATGAAGATCAAATTGGTTTGGAAGTTGTTCCAAATAATGATGAATGTGATGTTGGAATTCCAGTTAGAACTAGAAGCAAAGGTCGACCAAAAGGTTCAAAGGCAAAAGTAGTAGTTGAAGTTGTTTCAAATAATGATGAATGTGATGTTGGAAATCCAGTTAGAACCAAAAGCAAAGGTCGACCAAAACGATCAAGGCCAAAAGGAGGAGTTGAAGCTGCAACCAAGATTCGCCATTGTCTTTTTCCGAATTGTGGTGCAACCGGCCATGACACACGGAATTGTCCAAACAAAAGGAAACATAATGACATGTTGCCTAATGAATCACCTAATGTGTTCAAAAAGGGCTGGAGAAATTCATCTAATTAA 1704 0.365 MSTEVPDEVDTDEIELLTNVDFPQIFDSDDDAYNFYSSFAQRSGFSIRRHHVYRNTTDEGNPQTVYKREFVCHRSGVSKPVKVNELESQRKRKASRCSWNTLFGHLNFLAFVKGKNPQTILTDQDPSLKEAIANEFPNTKHAFCIWHILAKLPSWFSFVLGARYNDFKSEFFKVYHLDCEDDFEQYWKSMVAQFGLSNDIHIKLLYSLRQRWALPYLKDFFFAGMTTTGRSESINSYIKHFLDAKTSLTDFITRVGVAVQIRNQVGEEARMRQKYHNHLLKTSFPMEEHVASILTPYAFGLIQIEIELSTKYAATETNSGSFIVKHHTKDDGGRLVTWIEGQESIRCSCKEFEFSGILCRHAIRVLLMKNYFHIPSKYLPFRWRRESSLIPRSRHIVNNNDVSSSEFHSLIQCLEYESLKTKERKQIATKGLEDLIREIKGMSESHEDQIGLEVVPNNDECDVGIPVRTRSKGRPKGSKAKVVVEVVSNNDECDVGNPVRTKSKGRPKRSRPKGGVEAATKIRHCLFPNCGATGHDTRNCPNKRKHNDMLPNESPNVFKKGWRNSSN* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1647 567 MobiDBLite consensus disorder prediction 497 517 - -
Tpr5g1647 567 MobiDBLite consensus disorder prediction 543 567 - -
Tpr5g1647 567 Pfam SWIM zinc finger 341 370 IPR007527 GO:0008270
Tpr5g1647 567 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 24 98 - -
Tpr5g1647 567 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 107 445 - -
Tpr5g1647 567 Pfam MULE transposase domain 98 150 IPR018289 -
Tpr5g1647 567 SMART 26again6 345 372 IPR006564 GO:0008270
Tpr5g1647 567 ProSiteProfiles Zinc finger SWIM-type profile. 322 370 IPR007527 GO:0008270
Tpr5g1647 567 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 24 98 IPR031052 GO:0006355
Tpr5g1647 567 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 107 445 IPR031052 GO:0006355
Tpr5g1647 567 Pfam FAR1 DNA-binding domain 34 97 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1647 Tpr-Chr5 32007820 32010475 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr5g1647 FAR1 4.9e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1647 - - lja:Lj0g3v0071399.1 574.704