Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1642 ATGTCGTTTTTCACTGTGTGTCCAGAATCTGGAATTTACCGAACTACTTCACACCAATTTAAACTTGATTTTGAGATCAAAACAAAAGTTCAGGCCTGTGAAGGTAAAACCATTGATCGGTTTGGATTGTCCCTTTGCACCATCGCACAGATTTCTGCTTATGGTCCTGCTCATAATTTCTTAGTTGATGTTGTTGGTCTTATTACTGGTATTTCTGCTGAGAGGGAGTATATTCGGGATGGTAAGGTTACTAGGATGATTGTGGTTGAGTTGACTGATAGTAGTGGAAAGTGTGAGTGTGCTTTGTTTGGTGGTTATGCTGATGATCTTAAAAAAATGGTTGGGAAGGTTGATCGTGGTTTGCCAATTCTTGTTCTTCAATTTGCCAAAATTAAGATTTTCAGGGGAAAAGTATCTATTCAAAATGTTTTGAATGCTACTAGGATTTATTTTAATCCTTCAACACCAGAGGTTGTTTCTTTCAAGGAAAGTCTTGCTGTTGATGGGCTCTTGGCTGGTGGTTTGATTCCTATTATTGGCCCTCATACTAAGGTGTCTTTTGAAGAAGATTTTTTGAGTAATTTTCCCAAAACTTCAATTGTTAAGTTAGTAGGTAAGGAAGAGGATGGTGTTTACATTGTTGGTGGTGTTGTTGTTGGGCTGGTTGATCCGGAAGATTGGTGGTATCCTTCATGTACTTGTCATAGAAGTGTTTCTGCTGACTCTGGTGCATATTACTGCAAACAGTGTGTGAAACATGTTTTTAAGATGGTTCCAAGGTTTAGGGTTAAGATGATTGTTGATGATGGAACTGCTCAAGCTGTGTTTGTTGTTTTTGATGGCGATATGAGTATTTTGTGTGGAAAATCTTGCCATGAATTGGTTGCTTTGTCCAAGGCTGCAAATGCTCCTTCTTATCCTGCTGAAATAGATTTGGTTAAAGGGATGAAGTTGTTGCTTAAAGTGGAGAAAAGGTCTTCTGGTATACTTCTTTCTGATGATTCTTTCAGGGTGAAGAGAATATGCACTGATTTGTCTATAATTGATGTCTTTGATTCATTGATGGGTAATGTTCATTCTGGTTCTGATGATGACCAAAATATTGAAGGAGAGTATGTTGATAATACTCCTGTTGCTGATTCTGCTGGTAACTTGATTACTTTGCCCATACCTGTTAATCCTGTGGAAGTAAACTCTGTTGTTACTGGGGATGTTTACCCTGAGGTTGTGAATTTGGGCGATGATTCTGATAGTGGAATAGACTGGTTTGTTCCTGGGTGTGGTGGGTTGCAGGCTAATAAAGTTGGTTCCATTAAGCGGAATCTGCTATCTGCTTTTTCCGATTGTGATGACGCTCCCTCTAGCACTTTGAAGCTCACCAAGTCTTCTAAAAATTAG 1398 0.3891 MSFFTVCPESGIYRTTSHQFKLDFEIKTKVQACEGKTIDRFGLSLCTIAQISAYGPAHNFLVDVVGLITGISAEREYIRDGKVTRMIVVELTDSSGKCECALFGGYADDLKKMVGKVDRGLPILVLQFAKIKIFRGKVSIQNVLNATRIYFNPSTPEVVSFKESLAVDGLLAGGLIPIIGPHTKVSFEEDFLSNFPKTSIVKLVGKEEDGVYIVGGVVVGLVDPEDWWYPSCTCHRSVSADSGAYYCKQCVKHVFKMVPRFRVKMIVDDGTAQAVFVVFDGDMSILCGKSCHELVALSKAANAPSYPAEIDLVKGMKLLLKVEKRSSGILLSDDSFRVKRICTDLSIIDVFDSLMGNVHSGSDDDQNIEGEYVDNTPVADSAGNLITLPIPVNPVEVNSVVTGDVYPEVVNLGDDSDSGIDWFVPGCGGLQANKVGSIKRNLLSAFSDCDDAPSSTLKLTKSSKN* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1642 465 PANTHER REPLICATION FACTOR A 1, RFA1 13 295 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr5g1642 465 Pfam Replication factor-A C terminal domain 218 325 IPR013955 -
Tpr5g1642 465 Gene3D - 193 351 IPR012340 -
Tpr5g1642 465 SUPERFAMILY Nucleic acid-binding proteins 43 172 IPR012340 -
Tpr5g1642 465 CDD RPA1_DBD_B_like 63 165 - -
Tpr5g1642 465 Gene3D - 38 170 IPR012340 -
Tpr5g1642 465 SUPERFAMILY Nucleic acid-binding proteins 205 349 IPR012340 -
Tpr5g1642 465 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 13 295 - -
Tpr5g1642 465 CDD RPA1_DBD_C 223 322 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1642 Tpr-Chr5 31922962 31930110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1642 61 294 Core DNA Replication Machinery Family AT5G08020 22.892 4.29e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1642 - - mtr:MTR_8g062030 343.584