Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1568 ATGACAACTTCATTGCCCATTCTTAATTTTCTTCCTGTTGGATTCAGATTTAGACCAACAGATGAAGAGCTTGTTAACCACTACCTCAAAAACAAATTACTTGGTAATGATTACATTGTAAACAATGTTTTAGCAGAAGTTGATGTTTGCAAGTTTGAACCTTGTGAATTACCAGCTGTTTCAGTGATAAAATCAGTTGACCCAGAATGGTTTTTCTTGTCTCCTTGTGATTACAAGTATGCTAAGAGTAAAAGGTTTAACAGGGCAACAAAGTTTGGATTTTGGAAAGCTACTGGAAATGATCGTAAGATTAAGATTAGGGGTACTAATAAGATTATTGGGATTAAGAAAACTCTTGTTTACTATCATGGTCGTATTCCTGGTGTTAAGAGCAATTGGGTTATTCATGAGTATCATGATGTTACCTTGGAAGAAAACAAGAGGAATTTTGTTTTATGTCGCTTGATGAGGAAAGCCGAGACAAAAGCTGAAGAGGAAGCTGATATAATGATATATGATGAAGGGGAAGGGAAGCCAAGTAGAAACTTGAGTTCTTCTGACCATGAAAATCAAGAAACTGTTGAAGGAATTCCAGATGTAATAAGTGGTACTTTGCAAGAAATAAATATGCAGTCAATATTTCAGGCACCTTATCAGGCAGAAAATTACTACCCTTTCTCAACACAACAGTCTTCTATCTCTGAAAATGAGCCGGAAGTATTGATCCCAAACTTGCAACTTCACAATGCCTATTTTAGAAATGTAAACACGGTTGATCAAAGTCCGTTTAAAACTCCGGAAGAGGAAGATACATTCGTCAATTCGATGCTTACTGACGGGGAGTATATTGCTAGTGAAAAAAGAAAACATACTTTTATCAACAGTCCGGTCCGGTCCGAGTCATTGAGAATGGCTTACTATGAAAGCAGTGACACAGACGCCGAAGTAGTCTCTACGCCGTATGGCAGTATTATGGATACTTCAATGGCGTCTCTTCAATATCTTAGTCCAGGAGAATACTATGCATCGAAAATGTTGAAATCAACGCATTTTAATGTTTATGGAAGCACATATTTTCCATCTTTTAACAATGGTGAAAACGACAACAAAATGGAGAATACATTCCAAGATGATTTCGGCGGAGTGGCGGCATCGTCTTGTGACTCAACTGCAAATAAATCTTAA 1185 0.3713 MTTSLPILNFLPVGFRFRPTDEELVNHYLKNKLLGNDYIVNNVLAEVDVCKFEPCELPAVSVIKSVDPEWFFLSPCDYKYAKSKRFNRATKFGFWKATGNDRKIKIRGTNKIIGIKKTLVYYHGRIPGVKSNWVIHEYHDVTLEENKRNFVLCRLMRKAETKAEEEADIMIYDEGEGKPSRNLSSSDHENQETVEGIPDVISGTLQEINMQSIFQAPYQAENYYPFSTQQSSISENEPEVLIPNLQLHNAYFRNVNTVDQSPFKTPEEEDTFVNSMLTDGEYIASEKRKHTFINSPVRSESLRMAYYESSDTDAEVVSTPYGSIMDTSMASLQYLSPGEYYASKMLKSTHFNVYGSTYFPSFNNGENDNKMENTFQDDFGGVAASSCDSTANKS* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1568 394 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Tpr5g1568 394 SUPERFAMILY NAC domain 8 158 IPR036093 GO:0003677|GO:0006355
Tpr5g1568 394 Pfam No apical meristem (NAM) protein 12 139 IPR003441 GO:0003677|GO:0006355
Tpr5g1568 394 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Tpr5g1568 394 MobiDBLite consensus disorder prediction 174 193 - -
Tpr5g1568 394 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 8 294 - -
Tpr5g1568 394 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 8 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1568 Tpr-Chr5 30137448 30141159 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1568 11 162 NAC Transcription Factor Family AT4G35580 54.088 1.22e-49 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr5g1568 NAM 7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1568 - - mtr:MTR_8g023840 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1568 5 30137448 30141159 Tpr5g1568 5 30137448 30141159 ECH