Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1567 ATGCCGATTGGATATAGGTTCCACCCCACAGAAGAAGAGCTTGTGGGTCATTACTTAGAACACAAGTTGGCTGGTAACGATTCCATAGTTAGCAACATTACTGAAGTTAACCTTAACAGCATTGAACCTTGGGAATTACCAGTGATGTTAGCATTGTCAAAGACAACATCGGATGATTCAGAATGGTATTTTTTTACTACCGATGATTTGAAGTACAAGACAAGCACAAGATGTATAAGGACTACCAATGCTGGTTATTGGAAAAAAACCGGCATAACCCGTGAAATCAAGATCAAAGGAACCAACAATGTTATTGGCACAAAAAAGATTTTTGTTTTTTACAAACATTATGGTTCTCATATTGAAAAGACTAACTGGATCATCCACCAATATCATGCGATTAACGTTCCTGATAACAAGAGAAATTTTGTTTTGTGTCGATTGATGGAGAAAACTGAAGTAGTAAGAGATGAATTGATGTATGATGAAGGAGCAAGTAACCACGTTGCTGCGGGAGCTGAGTTAGAAAGCATAGCGGATTTAACTCCAAATGTATGTGGTTCCCCTGAAGTGACTATGCAATATAACTTACTAGCATCACCTCATGAAGATGATTATAGTTTCCCTGAAGCTACTAATCAGACATATTTTGAAGGTTTAACATCTTCAAATGCACATTTTAAGACTGAAAACAGCAATGCAGGGTTTGCATTTGAAACTGATCAAGAGGTTAAGGCTAATTATAATTCATTCTTGGATTCAGATTCAGCAGTTGGTGAAGTTTATATTAGTTATGAAACAAGTCAAAATGCACCTGCTTTTGTTGATGATTCCACTGCATAA 843 0.3654 MPIGYRFHPTEEELVGHYLEHKLAGNDSIVSNITEVNLNSIEPWELPVMLALSKTTSDDSEWYFFTTDDLKYKTSTRCIRTTNAGYWKKTGITREIKIKGTNNVIGTKKIFVFYKHYGSHIEKTNWIIHQYHAINVPDNKRNFVLCRLMEKTEVVRDELMYDEGASNHVAAGAELESIADLTPNVCGSPEVTMQYNLLASPHEDDYSFPEATNQTYFEGLTSSNAHFKTENSNAGFAFETDQEVKANYNSFLDSDSAVGEVYISYETSQNAPAFVDDSTA* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1567 280 Pfam No apical meristem (NAM) protein 2 132 IPR003441 GO:0003677|GO:0006355
Tpr5g1567 280 Gene3D NAC domain 10 155 IPR036093 GO:0003677|GO:0006355
Tpr5g1567 280 ProSiteProfiles NAC domain profile. 1 151 IPR003441 GO:0003677|GO:0006355
Tpr5g1567 280 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 3 240 - -
Tpr5g1567 280 PANTHER NAC DOMAIN CONTAINING PROTEIN 49 3 240 - -
Tpr5g1567 280 SUPERFAMILY NAC domain 1 150 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1567 Tpr-Chr5 30117497 30120119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1567 1 158 NAC Transcription Factor Family AT3G15170 43.373 2.42e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr5g1567 NAM 4.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1567 - - ccaj:109803958 218.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1567 5 30117497 30120119 Tpr5g1567 5 30117497 30120119 ECH