Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1566 ATGGAGTTGATGCAAGAAGTGAAAGACTATTCACATGAAGAATTAGAGGAAGAAGAAGATGAAGAAATCAACACAAGAACAAAAGAAGAAGAAAGTAATAGTAAGCAACAATTACAACACTGCCTTTTTTCTCCTTCACCTTCTAATTTCTCTTTATCTTCATCTTCTCCTTCAACAACTCATCATCATCATCATCATAATCAAAATCAATGGCTAGGAATCAATCAATCTCCTGAGTCTCATAATTCATCATCTAGAGGATTAGGGTTCTTACACCAAGATGCAACAACCTCAAATTTCACAAATCAAACAAATTTAAAACAAATAGATTTCATGGAATTGTCACTTGGTACAAACAAAGATCCTAGTTCTTCAAATACCAACCAACAAGAACAAGAACATCAACAACAGCAACAACAACCTAGTACACATGAAAAAGAACACATGTTTGACAAAGTTGTAACACCAAGTGATGTTGGAAAACTAAACCGTTTAGTTATACCAAAACAACATGCTGAAAAATATTTTCCACTTGATTCAACCTCGAATGAAAAGGGTCTTCTTCTAAATTTTGAAGATAGAAATGGAAAATTGTGGAGATTTAGATACTCTTATTGGAACAGTAGTCAAAGCTATGTTATGACAAAAGGTTGGAGTCGTTTTGTTAAGGATAAAAAACTTGATGCCGGCGACATTGTTTCGTTTCAACGCGGTGTTGGCGAATTGTTTCGACATAGGTTGTTTATTGATTGGAAGAGAAGATCAAATCATCATAATCTTGATCCTTCTTCATCAACACTTTTTACTCCTTTCTTTCTTCCTAATCAACAACAATATTCTATTAGATGGGGGGGAGGTGCTAATAGTAGATTCTATTCTCTTCCTTATCCTTCACCCCCACAAAGTTTACAACAACATCATCATCATCAGCAACAAAATCATCATCATCATCATCATCATGACCCTATGAGTTACAATTACCAAATGTATCCATTTCATCAACATGGTGGTGGAAATGTTGGAAATGTGAATCATCAATACAATTTTCATCATCAACAACAACATGATCCAAGTTCTGTCTTTTACATGAGATCATTAGCATCATCATCATCATCATCACCATCATCAATGGTTGATCAAGGAAGCTTAACAAGACATCAACAAGGAGGAGGAGGAGGAGGAGGAGGAGTTGGAAGAGGAAATGCTTCAAACATGATTATTGATTCTGTTCCTGTTTCTCATCATCATCAACATTATCATCATCAACATCAACTTGGTGGTTTTTCTAGTAGTGGAAATATAACTACTAATACTACTACTAGTACTATTAATGGTGCTGCAAAAAGGTTAAGATTGTTTGGTGTGAACATGGAGTGTGGTTCTTCAACAAATCATGATTCAATCCCTTCTTCTTCTTCTACTTCAATAGTACCATCTCTTCAACATTTGAGACTACCTCATCATGAAGAAACACTTTCAACATCATCAACAAGATTTGAAGAAGATAAAAGAAGAGAAGCTTCAATGATTTTTGGTTTAGACCCTTCTTTGCAATATCATAATTACCAACAACAATGA 1578 0.346 MELMQEVKDYSHEELEEEEDEEINTRTKEEESNSKQQLQHCLFSPSPSNFSLSSSSPSTTHHHHHHNQNQWLGINQSPESHNSSSRGLGFLHQDATTSNFTNQTNLKQIDFMELSLGTNKDPSSSNTNQQEQEHQQQQQQPSTHEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGVGELFRHRLFIDWKRRSNHHNLDPSSSTLFTPFFLPNQQQYSIRWGGGANSRFYSLPYPSPPQSLQQHHHHQQQNHHHHHHHDPMSYNYQMYPFHQHGGGNVGNVNHQYNFHHQQQHDPSSVFYMRSLASSSSSSPSSMVDQGSLTRHQQGGGGGGGGVGRGNASNMIIDSVPVSHHHQHYHHQHQLGGFSSSGNITTNTTTSTINGAAKRLRLFGVNMECGSSTNHDSIPSSSSTSIVPSLQHLRLPHHEETLSTSSTRFEEDKRREASMIFGLDPSLQYHNYQQQ* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1566 525 MobiDBLite consensus disorder prediction 299 321 - -
Tpr5g1566 525 ProSiteProfiles B3 DNA-binding domain profile. 150 255 IPR003340 GO:0003677
Tpr5g1566 525 MobiDBLite consensus disorder prediction 1 67 - -
Tpr5g1566 525 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 119 493 - -
Tpr5g1566 525 MobiDBLite consensus disorder prediction 120 139 - -
Tpr5g1566 525 Coils Coil 12 32 - -
Tpr5g1566 525 SMART B3_2 150 255 IPR003340 GO:0003677
Tpr5g1566 525 MobiDBLite consensus disorder prediction 120 147 - -
Tpr5g1566 525 Pfam B3 DNA binding domain 150 253 IPR003340 GO:0003677
Tpr5g1566 525 MobiDBLite consensus disorder prediction 36 58 - -
Tpr5g1566 525 CDD B3_DNA 148 237 IPR003340 GO:0003677
Tpr5g1566 525 MobiDBLite consensus disorder prediction 371 396 - -
Tpr5g1566 525 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 119 493 IPR044800 GO:0003700
Tpr5g1566 525 MobiDBLite consensus disorder prediction 371 387 - -
Tpr5g1566 525 Gene3D - 143 261 IPR015300 -
Tpr5g1566 525 SUPERFAMILY DNA-binding pseudobarrel domain 146 252 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1566 Tpr-Chr5 30085435 30087791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1566 113 462 RAV Transcription Factor Family AT2G46870 42.735 1.09e-73 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr5g1566 B3 7.2e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1566 - - mtr:MTR_8g023990 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1566 5 30085435 30087791 Tpr5g1566 5 30085435 30087791 ECH