Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1556 ATGGCTGCTTCTATTGAAACCAATGACAATATTGAACAAGATGCAATTGTTTTTGCCAATAACATAGCATCATTTGTCGCATTTCCTTTCGCAATTCGGTCAGCAATAGAACTTGGAATCTTCAAAGTCTTAGCCAAATTAGAGAATGGTATGAAACTATCTGCAAAAGAAATAGCTATTCAAATTGGATCAAAGAATCCAGAAGCATCAACAATGTTGGATCGTCTTCTGAGGTTGTTGGCTAATCATTCCATATTGCATTGCTCACTTTTTCATGATCAACACCAACCCACTTCCCCTCAAATAGTCTACAGCCTTGCCCCTGTCGCTGAGTACTTTGTTTGTGGTCTTAACAACATGTCATTCATATCTTTCTTAGACTTAACTCTAGACAAGGTCAGCATTGAAGCATGGACTGGTTTGAAAGGAGCAATCATGGAAGGAAATATACCATTCAATAGGGTTTATGGGATGCATATGTATGAGTATGCCGGTGTGGATCCTAGGTTCAATGATATTTTCAACAAAGCTATGCTCAACTTTACCACCATACTCATGAATAGAGTTCTTGAATGCTACAAAGGTTTTGAGCACATCAACACAATGGTGGACGTTGGTGGTGGTCTTGGAATCAATCTCAACCTAATCACTTCAAAATATTCTCATATACAGGGTGTTAATTTTGACTTGCCTCATGTCATAGAGAATGCCACAACCTATGCTGGTGTGACACATGTGGGAGGCGATATGTTTGTGAGTGTGCCTAAAGGAGATGTCATTTTCATGAAGTGGATACTTCACAATTGGAATGATGAACAATGTGTGAAGCTGTTAAAGAACTGCTATAAAGCTATTCCCAACGATGGCAAAGTTATTGTTGTTGAATCGATTCTTCCTATTTTGCCTGATAATACAATTATTTCCAAGACTTGTTCTCAAATTGACCTCAACATGATGGTTTATCATGAAGGAGGAAAAGAGAGAACTAAATATGAATTCATAGAATTAGCATTAAAATCTGGATTTAGTGGCATCAAATTTGCCATTTGTGTCTCTGGCATGTGGGTTATGGAGTTCTTCAAGTGA 1086 0.3785 MAASIETNDNIEQDAIVFANNIASFVAFPFAIRSAIELGIFKVLAKLENGMKLSAKEIAIQIGSKNPEASTMLDRLLRLLANHSILHCSLFHDQHQPTSPQIVYSLAPVAEYFVCGLNNMSFISFLDLTLDKVSIEAWTGLKGAIMEGNIPFNRVYGMHMYEYAGVDPRFNDIFNKAMLNFTTILMNRVLECYKGFEHINTMVDVGGGLGINLNLITSKYSHIQGVNFDLPHVIENATTYAGVTHVGGDMFVSVPKGDVIFMKWILHNWNDEQCVKLLKNCYKAIPNDGKVIVVESILPILPDNTIISKTCSQIDLNMMVYHEGGKERTKYEFIELALKSGFSGIKFAICVSGMWVMEFFK* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1556 361 Pfam Dimerisation domain 31 81 IPR012967 GO:0046983
Tpr5g1556 361 Pfam O-methyltransferase domain 138 343 IPR001077 GO:0008171
Tpr5g1556 361 PANTHER O-METHYLTRANSFERASE 15 361 IPR016461 GO:0008168
Tpr5g1556 361 Gene3D - 2 113 IPR036388 -
Tpr5g1556 361 SUPERFAMILY "Winged helix" DNA-binding domain 13 114 IPR036390 -
Tpr5g1556 361 Gene3D Vaccinia Virus protein VP39 117 361 IPR029063 -
Tpr5g1556 361 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 119 359 IPR029063 -
Tpr5g1556 361 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 15 361 - -
Tpr5g1556 361 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 361 IPR016461 GO:0008168
Tpr5g1556 361 PIRSF O-mtase 1 361 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1556 Tpr-Chr5 29758893 29763037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1556 12 361 Monolignol Biosynthesis Gene Families AT5G54160 48.857 1.81e-125 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1556 K13066 - gmx:100789402 459.144