Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1539 ATGGAGAGGCTTCAAGGACCCATCAATTCTTATCTTTTTGGTGAAGTAAATTGTTTAGACCAAACATTACTAGATGAAGAAAATCTGAGATTTGAAGAGGAAGAACAATTTCTCATGTCAAGTTTAGAAGATAACATACCATTTCTTCAAATGCTTCAAAATGTTGAAACCCCACAATTTTTTCCTTTGAAAGAACCAAACTTTCAAACACTTTTAAGGTTACAACATATGAAAAAACCATGGGAAGATTTATCTTTTGTTCCTAGAATAGATTCACAACAAGTTCAAACAACATTGGAATTTGAAAGTTGTGTAACACAAGACATATTAGAGATGCAATCACCAGTGAAATCAGAAAGCAATGAACTTCTTCAACACAAAGTTTCTACTTCATGCATTGAAAAATTCAGCTTTGAATGTAACCAAGAACAAAGAAAAATAGTACAATCTTGTTCTAAATCTCAAGTTGGAACAACTAAGGAAAAGAGAAAGAGAAAAAGAACAAGACCAGTTAAGAATAAGGAAGATGTTGAGAGTCAAAGAATGACACACATTGCTGTTGAAAGAAATAGAAGACGCCAAATGAATGACCATCTCAGTGTTCTTAGGTCACTTATGCCTTCTTCATATATTCAAAGGGGTGACCAAGCATCAATAATTGGAGGAGCAATAGATTTTGTGAAAGAGTTAGAACAATTGCTTGAATCTCTTGAAGCACAAAAAAGGATAAAAAAGAATGAAGAATTTGGTTCATCATCATCATCATCACCAACTAGTTATGGAATGAAATTATCATCTTGTGAAGAAAATGAGGTAAAGGCAGAAAATAAATCAGAAGCAGCAGATATAAAAGTAACATTGATTCAAACTCATGTGAACTTGAAAATTGAGTGCAAAAAAAGACATGGCCAATTGATAAAGGTTATTGTTGCTTTAGAGAATCTTAGGCTATCTATTCTTCACCTTAACATCACATCCTTTGATTCTTCTGTACTCTACTCCCTCAATCTCAAGATTGAAGAAGATTGTAAGCTAGGCACAGCAAATGACATAGCTGAAGCAGTTCATCAAATATTCAGCTACATTAATGGAAGCTAA 1098 0.3315 MERLQGPINSYLFGEVNCLDQTLLDEENLRFEEEEQFLMSSLEDNIPFLQMLQNVETPQFFPLKEPNFQTLLRLQHMKKPWEDLSFVPRIDSQQVQTTLEFESCVTQDILEMQSPVKSESNELLQHKVSTSCIEKFSFECNQEQRKIVQSCSKSQVGTTKEKRKRKRTRPVKNKEDVESQRMTHIAVERNRRRQMNDHLSVLRSLMPSSYIQRGDQASIIGGAIDFVKELEQLLESLEAQKRIKKNEEFGSSSSSSPTSYGMKLSSCEENEVKAENKSEAADIKVTLIQTHVNLKIECKKRHGQLIKVIVALENLRLSILHLNITSFDSSVLYSLNLKIEEDCKLGTANDIAEAVHQIFSYINGS* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1539 365 SMART finulus 185 236 IPR011598 GO:0046983
Tpr5g1539 365 MobiDBLite consensus disorder prediction 151 181 - -
Tpr5g1539 365 Gene3D - 170 247 IPR036638 GO:0046983
Tpr5g1539 365 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 230 IPR011598 GO:0046983
Tpr5g1539 365 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 247 IPR036638 GO:0046983
Tpr5g1539 365 PANTHER TRANSCRIPTION FACTOR BHLH70 18 364 - -
Tpr5g1539 365 Coils Coil 227 247 - -
Tpr5g1539 365 Pfam Helix-loop-helix DNA-binding domain 180 231 IPR011598 GO:0046983
Tpr5g1539 365 PANTHER MAX DIMERIZATION, MAD 18 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1539 Tpr-Chr5 29367419 29371377 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1539 32 364 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 44.220 4.92e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr5g1539 HLH 2.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1539 - - gmx:100789928 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1539 5 29367419 29371377 Tpr5g1539 5 29367419 29371377 ECH