Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1532 ATGTCGGTGGGAGAGGTTGCTTGTAGCTACTCACTCATGATCCTTCATGATGATAACATCGCCGTCACTGGTGAGAAAATCTCAACTTTGTTGAAAGCTGCAAATGTTAATGTTGAAGCTTACTGGCCAAGCTTATTCGCCAAACTTGCCGAGAAGAAAAACCTTGATGATTTGATATTGAATGCTGCTGGAGGTGGGGCTCCCGTTTCTGTTTCAGCCCCAGTTGCTGCTGCTGCCACCACTGCAGTTGCTGCTCCAACTGAGGAAAAGAAGGAAGAACCAAAGGAAGAGAGTGACGAAGACATGGGATTCAGCTTGTTTGATTAA 327 0.4587 MSVGEVACSYSLMILHDDNIAVTGEKISTLLKAANVNVEAYWPSLFAKLAEKKNLDDLILNAAGGGAPVSVSAPVAAAATTAVAAPTEEKKEEPKEESDEDMGFSLFD* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1532 108 MobiDBLite consensus disorder prediction 86 102 - -
Tpr5g1532 108 Pfam 60s Acidic ribosomal protein 22 107 - -
Tpr5g1532 108 MobiDBLite consensus disorder prediction 82 108 - -
Tpr5g1532 108 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN 1 100 - -
Tpr5g1532 108 Gene3D - 1 62 IPR038716 -
Tpr5g1532 108 CDD Ribosomal_P1 5 107 - -
Tpr5g1532 108 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 100 - -
Tpr5g1532 108 Hamap 50S ribosomal protein L12 [rpl12]. 6 108 IPR027534 GO:0003735|GO:0005840|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1532 Tpr-Chr5 29262406 29264169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1532 1 108 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 57.522 2.52e-38 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1532 K02942 - sind:105160280 120.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1532 5 29262406 29264169 Tpr5g1532 5 29262406 29264169 ECH
Tpr3g0618 3 6055925 6059378 Tpr5g1532 5 29262406 29264169 ECH