Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1518 ATGCCTGATAACATGAGTATATCTGTTAATGGACAATCTCAAGTTCCTCCTGGATTTAGGTTTCATCCAACTGAAGAAGAGCTTCTTCAATATTATTTGAGGAAAAAAGTCTCTTATGAGAAGATTGATCTTGATGTTATTCGTGATGTTGATCTCAACAAGCTTGAACCATGGGATATACAAGAGAAATGCAAAATAGGAACAACTCCACAAAATGATTGGTACTTCTTTAGCCACAAAGACAAGAAGTATCCAACTGGAACACGAACCAATCGAGCCACGGCTGCAGGCTTCTGGAAAGCCACTGGCCGTGACAAAGTTATATATAGCAATGGAAAAAGGATTGGAATGAGAAAGACTCTTGTTTTCTATAAAGGTCGTGCCCCTCATGGCCAAAAATCTGATTGGATCATGCATGAGTATAGACTAGACGATAATACCACCACTAGTGACACCAATCTGGTGTCAAATGTGATTAGTGATGGTGGTCAAGAAGAAGGATGGGTGGTGTGTAGGATATTCAAGAAGAAGAATCATCTCAAAACCCTAGACAGTCCTTTAGGCTCAGGAGAGGGAAGAAGAAACCAACACTTGTATGATGCTTGTGATGAAGGAGCTTTGGAGCAAATACTTCAACAAATGGGAAGGAGTTGCAAGGAAGAGAATTATGAAGCAAACTACAATAATTATGGAAGGTTTTCAAGGCCTTTTGATCAAACTAGCATCACTAACAATGGTGGTTATAGTAATGAAAGGTACATGAAACTTCCTAGCTTAGAGAGTCCAAAATCAACAAGCATGGACAACAATGACAACAATAATGAGTATCATGCACTTATTCAAGAAAATGAAGGGTCATTCACTAATCACCATAATAACATGGTTAATAATCCATTAGAGGCATCATCATCATCAATGTTGATAGCATCATGTGGTGGTGGTCTCACTAATTGGGTAGCTTTGGATAGGCTTGTTGCTTCTCAATTGAATGGACAAACTGAGGCTTCTAGGCAATTGGCTTGCTTCAATGACCCCACAATGGGATATTGCACTAATGATCATGATCTTCAACTTCCTACCCTTAGATCATCATCATCAACTTCATCATTATCGACGCATGCTCGAGCTGGTACTACTACTACTGCTACCACTACCGCTACCACTACCGCTAATGCTTACATTAGTCCGTCACAAGATTATGGTAGTGAGATTGATCTTTGGAATTTCGCTCGATCAACTTCTTCCTTGTTGACATCTTCAGAACCACTATGCCACGTGTCAAATACGTCTATGTGA 1296 0.3974 MPDNMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTTTSDTNLVSNVISDGGQEEGWVVCRIFKKKNHLKTLDSPLGSGEGRRNQHLYDACDEGALEQILQQMGRSCKEENYEANYNNYGRFSRPFDQTSITNNGGYSNERYMKLPSLESPKSTSMDNNDNNNEYHALIQENEGSFTNHHNNMVNNPLEASSSSMLIASCGGGLTNWVALDRLVASQLNGQTEASRQLACFNDPTMGYCTNDHDLQLPTLRSSSSTSSLSTHARAGTTTTATTTATTTANAYISPSQDYGSEIDLWNFARSTSSLLTSSEPLCHVSNTSM* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1518 431 PANTHER NAC DOMAIN-CONTAINING PROTEIN 12 9 375 - -
Tpr5g1518 431 SUPERFAMILY NAC domain 9 176 IPR036093 GO:0003677|GO:0006355
Tpr5g1518 431 MobiDBLite consensus disorder prediction 364 383 - -
Tpr5g1518 431 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Tpr5g1518 431 ProSiteProfiles NAC domain profile. 15 176 IPR003441 GO:0003677|GO:0006355
Tpr5g1518 431 Gene3D NAC domain 24 181 IPR036093 GO:0003677|GO:0006355
Tpr5g1518 431 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 9 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1518 Tpr-Chr5 28943020 28945024 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1518 1 430 NAC Transcription Factor Family AT2G46770 53.425 5.79e-140 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr5g1518 NAM 4.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1518 - - gmx:100793308 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1518 5 28943020 28945024 Tpr5g1518 5 28943020 28945024 ECH