Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1517 ATGTCTCAACAAAGACAATTTCATATGATGAGTGGTAACAATCAAGACCAATATAATGATACAACATTTACCAAACTTTTTGTTGGAGGGTTAGCTTGGGAGACTCAAAGGGATACAATGAGAAATTATTTTGAACAATTTGGAGAGATCTTAGAAGCTGTTGTGATCACTGATAAGTATACTGGAAGATCCAAAGGTTATGGTTTTGTCACATTTAAGGATCCAGAGGCAGCTATAAGAGCATGTCAGAATCCATCTCCAGTTATTGATGGTAGGAGGGCAAATTGCAATATTGCTTCTCTTGGTGCAAACAAGAATCGATCATTACCACTTCAACATCATGGAAGGTTTAGGCCTCCACATGGAGTGGTAGCATCAACTCCTTATCATGGTTCTTCATCTACAATTTTCCATCAACCAACTAGGCAGTACAATTTACCTTATTCAGCTTATGGATATTCTGGATATTCACAAGACACCTTGTATCCTCAAAACTATTACAATGTCTATGGAGTTCAACAATATTCACCTTACTATCCATCTATTGGAGCTGCTGCTGGGGCTATGGGGTTGATCCAAAATGTCTACCCTTACTATGGTCAATATGCACAAAATATTCATGGCCAAGGCTTTGGAGTTCAATACCCTCAAATGACTCAAATTCCAGTTTTACCTCAGCATTATGGTTCACAAGGAATATTGTCATTTCCTTCTTCAGTTGCAATGCCAACCATTAGTGCAGCGACGATAACTGCTACCGCAACTACTACAACAGCAACAGCTATGGCAGTTACAGGGGTTGGTAGTTCACAAGTCACTGGAACAGCTTCTGAACAACAACATTCTAAATCTTGA 855 0.3906 MSQQRQFHMMSGNNQDQYNDTTFTKLFVGGLAWETQRDTMRNYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQNPSPVIDGRRANCNIASLGANKNRSLPLQHHGRFRPPHGVVASTPYHGSSSTIFHQPTRQYNLPYSAYGYSGYSQDTLYPQNYYNVYGVQQYSPYYPSIGAAAGAMGLIQNVYPYYGQYAQNIHGQGFGVQYPQMTQIPVLPQHYGSQGILSFPSSVAMPTISAATITATATTTTATAMAVTGVGSSQVTGTASEQQHSKS* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1517 284 SUPERFAMILY RNA-binding domain, RBD 5 115 IPR035979 GO:0003676
Tpr5g1517 284 SMART rrm1_1 25 97 IPR000504 GO:0003723
Tpr5g1517 284 Gene3D - 1 110 IPR012677 -
Tpr5g1517 284 PANTHER BOULE-RELATED 1 273 IPR037366 GO:0003729
Tpr5g1517 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 116 IPR000504 GO:0003723
Tpr5g1517 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Tpr5g1517 284 PANTHER - 1 273 - -
Tpr5g1517 284 CDD RRM_RBM24_RBM38_like 24 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1517 Tpr-Chr5 28898729 28902723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1517 20 100 C2H2 Transcription Factor Family AT2G19380 41.975 5.18e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1517 - - gmx:100786208 404.06