Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1516 ATGGGGAAGAAAGGAAGTAGTTCATGGTTAACTGCTGTCAAAAGGGCATTCAGATCTCCAACAAAAGATAGTGACAAAAGAAGTGCTAGAAGAAGAGAAGATTGTGATCAAGAAGAAGATGAAGAAAAGAAGAGAGAAAAAAGAAGATGGATTTTTAGAAAACCAGTGAATCATGAAACAGTGAATAATACTCAACAAAGTACACCAACAAAGTTGAAGAATGATGTTGGTACTGTTACAAATGTTGTTTCAAGGACAGATCAAGATGAAAAACATGCTCTTGCTGTTGCTATGGCTACAGCTGAGGCAGCAAGAGCTACTGCTCAAGCTGCTGTTGAGGTTGCAAGATTGACTAAGCCTTCAAATCATGCTAGGGAGCATTATGCTGCTGTTGTGATTCAAACTTCTTTTAGAGGTTATTTGGCAAGAAGAGCGCTTCGTGCACTTAAAGGGTTGGTGAAGTTACAAGCTTTAGTGAGAGGTCACAATGTTAGGAAACAAGCAAAGATGACTCTTAGATGCATGCAAGCTCTTGTTAGAGTACAAGCAAGAGTTCTTGACCAAAGGATAAGGTCTACTTCAAATGAAGGAAGTAGAAAATCAGCCTTTAGTGACACGGCAAGTGTTTGGGATTCGCGGTATCTTCAAGACATTTCAGATAGGAAATCAATATCAAGAGAAGGAAGTAGTGTTGCAGATGATTGGGACGATCGTCCACACACTGTTGAAGAAGTTAAGGCCATGTTGCAACAGAGGAAGGAAGCAGCTATGAAGAGGGAAAAGTCCTTGTCCCAAGCTTTTTCACAACAGATTTGGAGAAATGGTAGGACATCATCAATTGGAAATGAAGATGAACTTGAAGAGAGACCAAAATGGCTAGATAGATGGATGGCTACAAAACCATGGGAGAATAGAGGAAGAGCTTCAACTGATCAAAGAGACTCTATCAAGACTGTGGAAGTCGACACATCTCAACCTTATTCATATCTCGGATCAAATTACAGAAGATCACATCCAAATTATCAATATAATCCACACCACCAACCACAAAGACATTCGATTGCTTCACCACTCCATAGGGCACACCAAAATGGATCCATTCACAACCAATCCATAACTACACCATCTCCGGCGAAATCAAGACCTATCCAAGTCCGGTCATCGAGCCCTCGTTGTGTTCGAGAAGATAGAAGCTACCACCACACTTCTCAAACACCTAGCTTAAGGTCTAATTATCAGTACAATGGCAATTTGTACCAAAATAGTAGGGTAGGAACAAGTAGTAATGGTAGTAACGGCGCTGCTTCTACTACATCTACATTGCCTAATTACATGCAAGCAACCGAGTCTGCGAAGGCTCGAATCCGGTCACAGAGTGCGCCGAGACAAAGGCCAATGACACCGGAGAGAGATAGATCGGGATCAGTAAAGAAAAGGCTTTCTTTTCCTGCTCCTGATCCTTATAATGTAGGAGGAGCCGCAGGTTATGGAAATTATGGACATAGTTTAAGAAGTCCTAGTTTCAAAAGTGTGAATGTAACGTCACATTACGGGTTGGAGCAAAATTCAAATTACTCTTCTTGTTATACCGAGAGTATCGGTGGCGAGGTTTCGCCTTCTTCAACCGGCGACCTTAGAAGGTGGATGAGATGA 1653 0.4168 MGKKGSSSWLTAVKRAFRSPTKDSDKRSARRREDCDQEEDEEKKREKRRWIFRKPVNHETVNNTQQSTPTKLKNDVGTVTNVVSRTDQDEKHALAVAMATAEAARATAQAAVEVARLTKPSNHAREHYAAVVIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRIRSTSNEGSRKSAFSDTASVWDSRYLQDISDRKSISREGSSVADDWDDRPHTVEEVKAMLQQRKEAAMKREKSLSQAFSQQIWRNGRTSSIGNEDELEERPKWLDRWMATKPWENRGRASTDQRDSIKTVEVDTSQPYSYLGSNYRRSHPNYQYNPHHQPQRHSIASPLHRAHQNGSIHNQSITTPSPAKSRPIQVRSSSPRCVREDRSYHHTSQTPSLRSNYQYNGNLYQNSRVGTSSNGSNGAASTTSTLPNYMQATESAKARIRSQSAPRQRPMTPERDRSGSVKKRLSFPAPDPYNVGGAAGYGNYGHSLRSPSFKSVNVTSHYGLEQNSNYSSCYTESIGGEVSPSSTGDLRRWMR* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1516 550 MobiDBLite consensus disorder prediction 360 412 - -
Tpr5g1516 550 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 1 550 - -
Tpr5g1516 550 MobiDBLite consensus disorder prediction 303 330 - -
Tpr5g1516 550 Pfam IQ calmodulin-binding motif 129 147 IPR000048 GO:0005515
Tpr5g1516 550 Pfam IQ calmodulin-binding motif 153 169 IPR000048 GO:0005515
Tpr5g1516 550 Gene3D - 123 185 - -
Tpr5g1516 550 PANTHER IQ-DOMAIN 5-RELATED 1 550 - -
Tpr5g1516 550 MobiDBLite consensus disorder prediction 303 318 - -
Tpr5g1516 550 ProSiteProfiles IQ motif profile. 150 177 IPR000048 GO:0005515
Tpr5g1516 550 MobiDBLite consensus disorder prediction 360 387 - -
Tpr5g1516 550 Pfam Protein of unknown function (DUF4005) 389 495 IPR025064 -
Tpr5g1516 550 MobiDBLite consensus disorder prediction 448 464 - -
Tpr5g1516 550 MobiDBLite consensus disorder prediction 1 46 - -
Tpr5g1516 550 ProSiteProfiles IQ motif profile. 126 154 IPR000048 GO:0005515
Tpr5g1516 550 SMART iq_5 125 147 IPR000048 GO:0005515
Tpr5g1516 550 SMART iq_5 148 169 IPR000048 GO:0005515
Tpr5g1516 550 MobiDBLite consensus disorder prediction 18 46 - -
Tpr5g1516 550 MobiDBLite consensus disorder prediction 448 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1516 Tpr-Chr5 28882095 28885731 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1516 1 550 IQD Protein Family AT1G01110 57.719 1.11e-179 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1516 - - gmx:100799284 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1516 5 28882095 28885731 Tpr5g1516 5 28882095 28885731 ECH