Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1507 ATGGAAGATTTCATCCTTTCACCTTCTTCATATTCATCTATGATTTCACTCCCCCATGAAAACCCTTCACAACAAACACAAACCCTTCAAAAAAAACTTCAATTATTACTACAAACCCAATCCAACAATTGGGTCTATGCCATTTTTTGGCAAACAACAAAAGATGAAAAAGGCAACACTTTCTTATCTTGGGGTGAAGGCCATTTCCAAGGAACCAAAGAAACAACAACAATTTCTTCAAACAAACGAAACGACACAGACACTGACACAAGTACAAACGGCGATGCTGAATGGTTCTATGTTATGTCGTTGACTCGAAATTTCAGTGTTGGTAATTCTTCTTCCATTTCTTTACCCGGTAAAGCTTTTGCTTTAGATTCCGTTCTTTGGTTAAATAGCAAACATGAACTCCAATTTTATAATTGTGAGAGATCCAATGAAGCACACATGCACGGAATCGAAACCTTAATTTGTATTCCGACAACTAATGGCGTAATAGAAATGGGTTCTTATGAAAATATCCAACAAAATTGGAACCTAGTACATCAAGCTAAATCTATGTTCCAATCAACATCTTCAGAATCAAACTCAAAATTAGATCTCATCTCCACCACCCCACTTGACAAAAACCAAACTTTCGACCAAAACATTTCACTCTCCGACATGGGTCTCGTCTCATGTGCCAGAGGCACCGGAGACGAAACCAAGGAGACACAAAAAATTATGAATAAAAAATTGCAACCAAAGCATAACATTGATGTTTCATCATGTTATGTTGATTCTGAACATTCTGATTCAGAATATTGTCCACAATTAGAAACACCAAAAAGTGATTATGTTGATGAGAAAAGAGAATTGAAGAAGAGAGGAAGAAAACCATTAACAGGAACAACTCAAACACCAATGAACCATGTAGAAGCAGAGAGGCAAAGGAGAGAGAAACTGAACCATAGATTCTATGCTTTAAGAGCTGTGGTTCCAAATGTTTCAAGAATGGATAAAGCTTCTTTGTTATCAGATGCAGTGGATTACATCAACGAGTTAAAATCAAAGATTAAAGATTTAGAATCTGAGAAAAAAAGGGAATCTAAAAAAGTGAAGATGGAAACTATGGATAATCAAAGTACAATGACAACTTCAACTGTTGTGGATCAAAAAAGACCTAATAGTGTTAATGCTTTGGATATTGATGTGAAGATTATTGGAAATGATGCTATGATTAGAGTTCAATCAGAGAATGTTAATCATCCTGGTGTTAGATTAATGAGTGCATTGAGGAATTTGGATTTTCAGGTTCGAACCTGA 1305 0.3563 MEDFILSPSSYSSMISLPHENPSQQTQTLQKKLQLLLQTQSNNWVYAIFWQTTKDEKGNTFLSWGEGHFQGTKETTTISSNKRNDTDTDTSTNGDAEWFYVMSLTRNFSVGNSSSISLPGKAFALDSVLWLNSKHELQFYNCERSNEAHMHGIETLICIPTTNGVIEMGSYENIQQNWNLVHQAKSMFQSTSSESNSKLDLISTTPLDKNQTFDQNISLSDMGLVSCARGTGDETKETQKIMNKKLQPKHNIDVSSCYVDSEHSDSEYCPQLETPKSDYVDEKRELKKRGRKPLTGTTQTPMNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVDYINELKSKIKDLESEKKRESKKVKMETMDNQSTMTTSTVVDQKRPNSVNALDIDVKIIGNDAMIRVQSENVNHPGVRLMSALRNLDFQVRT* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1507 434 CDD bHLH_AtAIB_like 301 361 - -
Tpr5g1507 434 MobiDBLite consensus disorder prediction 284 307 - -
Tpr5g1507 434 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 29 188 IPR025610 -
Tpr5g1507 434 Coils Coil 432 434 - -
Tpr5g1507 434 SMART finulus 305 354 IPR011598 GO:0046983
Tpr5g1507 434 PANTHER TRANSCRIPTION FACTOR BHLH14 1 433 - -
Tpr5g1507 434 PANTHER MYC 1 433 IPR045084 GO:0003700|GO:0006355
Tpr5g1507 434 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 299 348 IPR011598 GO:0046983
Tpr5g1507 434 Coils Coil 338 372 - -
Tpr5g1507 434 Pfam Helix-loop-helix DNA-binding domain 303 348 IPR011598 GO:0046983
Tpr5g1507 434 Gene3D - 295 365 IPR036638 GO:0046983
Tpr5g1507 434 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 299 363 IPR036638 GO:0046983
Tpr5g1507 434 MobiDBLite consensus disorder prediction 359 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1507 Tpr-Chr5 28740081 28742076 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1507 1 432 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 33.908 5.64e-81 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr5g1507 bHLH-MYC_N 1.9e-44 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1507 - K13422 var:108347008 449.514