Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1504 ATGGAAGATTTCATCATTTCACCTTCTTCATCTTCCTCTATGATTTCATTCCTCAATGAAAACCCTTCACCACAAACACAAACACAAACACAAACCCTTCAACAAAAGCTTCAATTGTTACTCCAATCTCAATCAGAAAATTGGGTCTATGCCATTTTTTGGCAAACAACAAAAGATGAAAAAGGTAACACTTTCTTATCTTGGGGTGAAGGCCATTTCCAAGGAACCAAAGAAACAACATCTTCAAAAAAAGAAAACGACACGAACACTGACACGTCTACAAACGGCGATGCGGATTGGTTCTATGTTATGTCTTTGACTCGAAATTTTTGTGTTGGTAATTCTTCTTCAATTTCTTTACCTGGTAAAGCTTTTGCTTTAGATTCTGTTCTTTGGTTAAATAGTAAACATGAACTTCAATTTTATAATTGTGAGAGATCCAATGAAGCACACGTGCACGGAATTGAAACGTTAATATGTATTCCGACAACTAACGGTGTAATCGAAATGGGTTCTTATGAAAATATCCAACAAAATTGGAACCTCGTACACCAAACAAAATCTATGTTCCAATTCCAATCAACATCGTCAGAATCAAACTCAAAATTAGATCTTATCTCCACCACCCCACTTGACAAAATCCAAACTTTCGACCAAAACATCTCATTTTCCGACATGGGTTTCATCTCCGGCACCAACAAAGAAACAGATGAGAAGCAAAAAATGATGAACGAAAAATCACAACAAAAACATAACATTGTTGTTTCACCAAAAAAATCTCATTATGTTGATTCTGAACATTCTGATTCAGATTATTGTCCTCAACTAGAAACACCAAAAAGTGATTCTGTTGATGAGAAAAGAGAACTGAAGAAGAGAGGAAGAAAACCATTAACAGGAACAACTCAAACACCAATGAACCATGTAGAAGCAGAGAGACAAAGGAGAGAGAAACTGAATCATAGATTCTATGCTTTAAGAGCTGTGGTTCCAAATGTTTCAAGAATGGATAAAGCTTCTTTGTTATCAGATGCAGTGGATTACATCAATGAGTTAAAATCAAAGATTAAAGATTTAGAATCTGAGAAAAAAAGTGAATCTAAAAAAGTGAAGATGGAAACTATGGATAATCAAAGTACAGTGACAACTTCAACTGTTGTGGATCAAAAAAGACCTTGTTGTAAAAATAATAATGTTATTGCTTTGGAGATTGATGTGAAGATTATTGGAAATGATGCTATGATTAGAGTTCAATCAGAGAATATTAATCATCCTGGTGCTAGATTAATGAGTGTATTCAAGGATTTGGAATTTCAGGTACATCATGCTAGTATATCTTGTGTTAATGAAGTTATGGTTCAAGATGTTGTTGTTGTTCAAGTTCCTAAAGAGATAAGAAATGAAGAGAGTCTTAAATCTGCAATTCTCATGAGATTAGATGATCAAGAATGA 1452 0.3409 MEDFIISPSSSSSMISFLNENPSPQTQTQTQTLQQKLQLLLQSQSENWVYAIFWQTTKDEKGNTFLSWGEGHFQGTKETTSSKKENDTNTDTSTNGDADWFYVMSLTRNFCVGNSSSISLPGKAFALDSVLWLNSKHELQFYNCERSNEAHVHGIETLICIPTTNGVIEMGSYENIQQNWNLVHQTKSMFQFQSTSSESNSKLDLISTTPLDKIQTFDQNISFSDMGFISGTNKETDEKQKMMNEKSQQKHNIVVSPKKSHYVDSEHSDSDYCPQLETPKSDSVDEKRELKKRGRKPLTGTTQTPMNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVDYINELKSKIKDLESEKKSESKKVKMETMDNQSTVTTSTVVDQKRPCCKNNNVIALEIDVKIIGNDAMIRVQSENINHPGARLMSVFKDLEFQVHHASISCVNEVMVQDVVVVQVPKEIRNEESLKSAILMRLDDQE* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1504 483 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 303 352 IPR011598 GO:0046983
Tpr5g1504 483 Coils Coil 342 369 - -
Tpr5g1504 483 SMART finulus 309 358 IPR011598 GO:0046983
Tpr5g1504 483 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 303 366 IPR036638 GO:0046983
Tpr5g1504 483 Gene3D - 299 369 IPR036638 GO:0046983
Tpr5g1504 483 PANTHER MYC 1 479 IPR045084 GO:0003700|GO:0006355
Tpr5g1504 483 PANTHER TRANSCRIPTION FACTOR BHLH14 1 479 - -
Tpr5g1504 483 MobiDBLite consensus disorder prediction 236 315 - -
Tpr5g1504 483 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 33 190 IPR025610 -
Tpr5g1504 483 MobiDBLite consensus disorder prediction 280 296 - -
Tpr5g1504 483 Pfam Helix-loop-helix DNA-binding domain 307 352 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1504 Tpr-Chr5 28653461 28655383 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1504 16 479 EF-hand Containing Proteins AT5G46830 32.090 1.04e-64 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr5g1504 bHLH-MYC_N 7.5e-43 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1504 - K13422 gmx:100795733 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1504 5 28653461 28655383 Tpr5g1504 5 28653461 28655383 ECH