Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1500 ATGTTCTTTTTTGGTTTAGCAATAATGGGTTTGGTTGAAAAGAGTCCAAAGATTAATCTTCATTTGCATAGACATCATCTTCAACATAAGCATGAGTTCAAAGGTGTTCCAAAAGGTTTTATGGCAATAAAAGTTGGTTTAGGAGAAGAACAACAAAGGTTTGTTGTTCCTGTTTTGTACTTCAATCACCCTCTTTTCATTCAACTATTGAAAGAGGCTGAAGAAGAATATGGATTTGATCAAAAAGGAACAATTACTATTCCTTGTCATGTTGAAGAATTCACAAAAGTTCGTGGTTTGATTGATAGAGACAAGAATCTTCATCAACATGTTGGATGTTTTGGTTTATGA 351 0.3305 MFFFGLAIMGLVEKSPKINLHLHRHHLQHKHEFKGVPKGFMAIKVGLGEEQQRFVVPVLYFNHPLFIQLLKEAEEEYGFDQKGTITIPCHVEEFTKVRGLIDRDKNLHQHVGCFGL* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1500 116 Pfam Auxin responsive protein 31 97 IPR003676 GO:0009733
Tpr5g1500 116 PANTHER SMALL AUXIN-UP RNA-RELATED 28 111 - -
Tpr5g1500 116 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 28 111 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1500 Tpr-Chr5 28560679 28561486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1500 15 94 Calmodulin-binding Proteins AT5G20810 44.318 7.40e-17 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1500 - K14488 gmx:111188139 163.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1500 5 28560679 28561486 Tpr5g1500 5 28560679 28561486 ECH
Tpr5g1500 5 28560679 28561486 Tpr6g0038 6 399743 400499 ECH