Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1489 ATGATGGGTGTAGATTTTCTTACTTCTGGTCCTACCTCAACTGCGATTTCTCAAATCATAGAAACCATTAGTGAGTTTGTAACTTGTGCTAGTGATGCACTTCTGGAGAAGGATAGTTTTAAGGAACTTGGCACTTATTTGGAAAGAATTATGCCGGTTTTAAAGGAATTGAGGAGAGAAAAAGTGAGTGATTCTGAGACATTCAACCGTGCTATTGATATTATGAATCGCGAAACGAGAGAAGCGAAGATGCTTGCTCTAGAATGTAGTAAGAAGAGCAAGGTTTATCTGTTAATGAATTGCAGGTCTATTGTACAGAAGTTAGAAAATCACACAAAAGAGTTAAGCAAGGCGCTTGGTCTTCTTCCTTTAGCTACATCAGGTCTTTCGGCTGGAATATTGCAAGAGATTGGAAAGATCTGTGATAATATGGAGAAAGCTGGATTTAAGGCTGCAATAGCGGAAGAGGAGATTTTAGAGAAAATTGAGTCAGGGATAAGAGAAAACAATGTCAATCGTTCGTATGCGAATAATTTAATGACTCTCATTGCTGAGGCTGTTGGAATTACAAATGAGAAGTCGACAATTAAGGTTGAACTTGAAGAGTTTAAGAAAGAAATTGAAAATGCACGAGTTGATAAGAAAAAGGCTGAAGCTATGCAAATGGATCAGATCATTGCTTTGTTAGAAAGAGCTGATGCAGCCTCGTCACCAAGTGAAAGGAAACTGAAATACTTTGCAAAACGGCAATCTTTAGGTAGTCGGATATTGGAGCCTTTACAGTCATTTTATTGCCCTATCACACATGATGTTATGGTCGAACCTGTTGAAACTTCGTCAGATCAAACATTTGAGAGAAGTGCAATAGAGAAGTGGTTTGAAGAAGGAAATAAGTTGTGTCCTTTGACGATGATTCCTTTAGATACATCAGTTTTGAGACCTAACAAAACTTTGAAACAATCCATAGAAGAATGGAAGGATAGAAACACAATGATTACAATTGCTACATTAAAAGAAAAAATACATCAGTTTGGAGATGATGATGAAGTGATTAATTCACTAAAAACTCTTCAAGATTTGTGTGAGCAGAGGGAGCAACACAGGGAATGGTTGATGCTTGAGGACTACATACTAGTTCTTATTCAAATTCTCGGTTCGAGAAACCGTGATATAAGGAATCATGCTCTTGTCATCCTGTGCATTCTAGCAAAGGATAATGAAGAAGCTAAGGAAAGAATTGTAACGGTTGATAATGCAATTGAATCGATCGTCCATTCTCTTGGACGGCGTCCGGAGGAAAGAAAGTTAGCAGTAGCATTACTGCTTGAATTGTCCAAATATGATTTGGCTCGAGAACATATTGGAAAAGTTCAAGGTTGCATACTGCTATTGCTGACTATGTCTAATGGAGATGACAATCAAGCTGCTGAAGATGCAACTGAGCTATTGGATAATCTTTCGTACTCTGATCAGAATGTTATACTGATGGCAAAGGCAAATTATTTCAAGCATTTACTGCAGCGTCTCTCCACAGGAGCAGATGATGTAAAGATGATTATGGCGAAAACTTTAGCAGAAATGGAGTTAGCTGACCACAATAAGGAGTCCTTATTTGCCGGTGGTGTATTAGCTCCTCTTCTTCACTTGTTCTTACATAATGATCTTCAGGTTAAAACAGTGGCCACAAAAGCTCTTAGGAATTTATCTAGTTTAAAGACAAATGGACTAGAAATGATTCGACAAAGGGCTGTGCGGCCGTTGCTTGACCTCCTTTTCCACCATAGCATACATACATCAAGTTTATGGGAAGATGTAGCAGCCATAATTATGCAACTTGCTGCATCAACTATCTCTCAAGATGCTCAAACATCAGTTTTATTGCTAGATTCTGATGATGATGTTTTTAATCTTTTCCCTCTTGTCAGTGTGACACAACCTGGTGTTCAACAAAACATTATCCAGACCTTTTATGTCTTGTGTCAGTCACCCTCCTCGTCGCATATCAGGACCAAGCTAAATCAGTGCTCAGCTATCCCAGAATTGGTTAGGTTGTGTGAGAATGAGAATCTAAACCTAAGAGCAAGTGCTGTAAAGTTATTTTCATGCTTGGTAGAGAGTTGTGATGAATCCATCATACTAGAGAATGTTGGTCAGAAATGCATCAATACTTTACTTAAGATCCTAGAATCTTCATCTGATGAAGAAGAAATACTTTCTGCTATGGAAATAATATGCCATCTTCCAGAAATTGATCAGATAACTCAATGGATTCTAGATGCTGGTATACTTCCAATCATTTATAAATCTGTCCAAGATGGTAGAGACAGAGATCTTCAAAAGAGTAACTTGGTAGAGAAAGCGATTGGTGCTTTACGTCGTTTTACAGTTCCAACGAACTTGGAGTGGCAAAAAATTGCAGCTGAAACCGGGATTATAACTGTTTTAGTGCAGTTACTTGAAAGTGGAACAACCTTGACAAAACAACGTGCGGCGACGTGTCTTACTGAATTTTCTAAAAGCTCGGTTAAGCTCAGCAGACCGATTCCAAAGCAAAAAGGACTACTATGTTGCTTCTCAACTCCAAAAGAAATTGGCTGCAATGTTCACGGAGGAATATGCACCGTTAAGTCATCATTTTGCCTTTTGGAAGCTCAAGCAATCGGACCACTCACAAAAAATCTTGGTGAATCTGATTATGGAGTTTGTGAAGCTTCTTTGGATGCTTTATTAACATTGATTGAAGGTGATAGAATAGAGAGTGGTGGTAAAGTGCTTTCAAAAGAAAATGCAATACCATTAATAATAAAATTTCTTAGTTCTTCCTCTCTTGGGTTGCAAGAAAAGTCTCTACAAGTTTTGGAAAGTCTTTTTCAGCTAGTAGAATTCAAACAAATGTATGGAGCCTCAGCTCAAATGCCTCTAGTTGACTTAACTCAAAGAAGTAATGGTAGAGTTAGATCCATGTCAGCTAGAGTATTGGCACATTTGAATGTACTTCATGATCAATCTTCATACTTTTAA 3021 0.38 MMGVDFLTSGPTSTAISQIIETISEFVTCASDALLEKDSFKELGTYLERIMPVLKELRREKVSDSETFNRAIDIMNRETREAKMLALECSKKSKVYLLMNCRSIVQKLENHTKELSKALGLLPLATSGLSAGILQEIGKICDNMEKAGFKAAIAEEEILEKIESGIRENNVNRSYANNLMTLIAEAVGITNEKSTIKVELEEFKKEIENARVDKKKAEAMQMDQIIALLERADAASSPSERKLKYFAKRQSLGSRILEPLQSFYCPITHDVMVEPVETSSDQTFERSAIEKWFEEGNKLCPLTMIPLDTSVLRPNKTLKQSIEEWKDRNTMITIATLKEKIHQFGDDDEVINSLKTLQDLCEQREQHREWLMLEDYILVLIQILGSRNRDIRNHALVILCILAKDNEEAKERIVTVDNAIESIVHSLGRRPEERKLAVALLLELSKYDLAREHIGKVQGCILLLLTMSNGDDNQAAEDATELLDNLSYSDQNVILMAKANYFKHLLQRLSTGADDVKMIMAKTLAEMELADHNKESLFAGGVLAPLLHLFLHNDLQVKTVATKALRNLSSLKTNGLEMIRQRAVRPLLDLLFHHSIHTSSLWEDVAAIIMQLAASTISQDAQTSVLLLDSDDDVFNLFPLVSVTQPGVQQNIIQTFYVLCQSPSSSHIRTKLNQCSAIPELVRLCENENLNLRASAVKLFSCLVESCDESIILENVGQKCINTLLKILESSSDEEEILSAMEIICHLPEIDQITQWILDAGILPIIYKSVQDGRDRDLQKSNLVEKAIGALRRFTVPTNLEWQKIAAETGIITVLVQLLESGTTLTKQRAATCLTEFSKSSVKLSRPIPKQKGLLCCFSTPKEIGCNVHGGICTVKSSFCLLEAQAIGPLTKNLGESDYGVCEASLDALLTLIEGDRIESGGKVLSKENAIPLIIKFLSSSSLGLQEKSLQVLESLFQLVEFKQMYGASAQMPLVDLTQRSNGRVRSMSARVLAHLNVLHDQSSYF* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1489 1006 Pfam U-box domain 263 329 IPR003613 GO:0004842|GO:0016567
Tpr5g1489 1006 Coils Coil 193 220 - -
Tpr5g1489 1006 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 541 583 IPR000225 GO:0005515
Tpr5g1489 1006 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Tpr5g1489 1006 SMART arm_5 750 796 IPR000225 GO:0005515
Tpr5g1489 1006 SMART arm_5 530 570 IPR000225 GO:0005515
Tpr5g1489 1006 SMART arm_5 799 839 IPR000225 GO:0005515
Tpr5g1489 1006 SMART arm_5 406 446 IPR000225 GO:0005515
Tpr5g1489 1006 SMART arm_5 447 488 IPR000225 GO:0005515
Tpr5g1489 1006 SMART arm_5 665 705 IPR000225 GO:0005515
Tpr5g1489 1006 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Tpr5g1489 1006 CDD RING-Ubox_PUB 263 304 IPR045210 -
Tpr5g1489 1006 Gene3D - 339 634 IPR011989 -
Tpr5g1489 1006 Gene3D - 873 1004 IPR011989 -
Tpr5g1489 1006 Gene3D - 635 854 IPR011989 -
Tpr5g1489 1006 SUPERFAMILY RING/U-box 248 331 - -
Tpr5g1489 1006 SUPERFAMILY ARM repeat 346 996 IPR016024 -
Tpr5g1489 1006 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1006 - -
Tpr5g1489 1006 Gene3D - 14 127 IPR036537 GO:0007166
Tpr5g1489 1006 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1006 - -
Tpr5g1489 1006 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 338 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1489 Tpr-Chr5 28254675 28259996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1489 250 1006 U-box Gene Family AT1G76390 27.826 2.95e-64 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1489 - - gmx:100799969 1473.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1489 5 28254675 28259996 Tpr5g1489 5 28254675 28259996 ECH
Tpr5g1489 5 28254675 28259996 Tpr6g0045 6 426997 432597 ECH