Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1486 ATGAGACCTGTTTTCGCTGGGAATTTGGAGTACGATACTCGTCAATCAGACCTCGAACGCTTGTTCTCAAAGTATGGCAGGATTGAACGCGTTGATATGAAATCTGGATTTGCTTTTGTCTATTATGAAGATGAGCGTGATGCTGAAGAAGCAATCCGTGCACTTGACAATGTTCCATTTGGGCATGATAAGCGACGACTGTCTGTGGAGTGGGCTAGGGGTGAACGTGGGCGTCATCGTGATGGTTCAAAGGCAAACCAGAAGCCCACAAAAACTCTTTTTGTGATTAACTTTGACCCAATTCGCACAAGAGTTAGTGATATAGAGAGACACTTCAAACCTTATGGGGAGCTTCATCATGTTCGAATTCGTCGGAACTTTGCATTTGTGCAGTATGAAACACAAGAAGATGCTACTAAAGCCTTAGAGTGTACAAATATGAGTAAGATACTAGACAGGGTGGTGTCTGTGGAGTATGCTCTGAGGGATGATAGTGAGAGGGTCGACAATTATGGAAGTCCCAGAAGAGGAGGGGGTCTTGCTAGATCTCCCAGTCCAGGTTATCGTAGGAGACCAAGTCCTGACTATGGCCGTCCACGCAGTCCTGTGTATGATAGGTATAGTGGACCGGACAGGCGGAGGAGTCCTGATTACGGAAGGAACAGGAGTCCTGATTACGGCAGGAACAGGAGTCCTGATTACGGCAGGAACAGGAGTCCCGAATATGGAAGATATCGCAGTCGTTCACCTATACGAAGGTCGAGAACTTAG 771 0.4682 MRPVFAGNLEYDTRQSDLERLFSKYGRIERVDMKSGFAFVYYEDERDAEEAIRALDNVPFGHDKRRLSVEWARGERGRHRDGSKANQKPTKTLFVINFDPIRTRVSDIERHFKPYGELHHVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSERVDNYGSPRRGGGLARSPSPGYRRRPSPDYGRPRSPVYDRYSGPDRRRSPDYGRNRSPDYGRNRSPDYGRNRSPEYGRYRSRSPIRRSRT* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1486 256 MobiDBLite consensus disorder prediction 167 256 - -
Tpr5g1486 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Tpr5g1486 256 SUPERFAMILY RNA-binding domain, RBD 83 188 IPR035979 GO:0003676
Tpr5g1486 256 MobiDBLite consensus disorder prediction 205 248 - -
Tpr5g1486 256 Gene3D - 83 171 IPR012677 -
Tpr5g1486 256 Gene3D - 1 82 IPR012677 -
Tpr5g1486 256 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 201 - -
Tpr5g1486 256 SMART rrm1_1 92 158 IPR000504 GO:0003723
Tpr5g1486 256 SMART rrm1_1 3 70 IPR000504 GO:0003723
Tpr5g1486 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Tpr5g1486 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 60 IPR000504 GO:0003723
Tpr5g1486 256 SUPERFAMILY RNA-binding domain, RBD 4 80 IPR035979 GO:0003676
Tpr5g1486 256 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 5 201 IPR029537 GO:0000398|GO:0005681
Tpr5g1486 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1486 Tpr-Chr5 28238562 28241274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1486 4 164 Eukaryotic Initiation Factors Gene Family AT1G49760 23.370 2.46e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1486 K12893 - gmx:100797709 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1486 5 28238562 28241274 Tpr5g1486 5 28238562 28241274 ECH