Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1477 ATGGGAAGAGCACCTTGTTGTGCAAAAGTTGGATTGCAGAAGGGTCCATGGACTACTAAAGAAGATGCATTGCTTACAAAGTATGTTCAAGCTCATGGTGAAGGCAAATGGAAATCACTTCCCAAAAAAGCTGGACTTCTTAGATGTGGAAAAAGTTGTAGACTTAGATGGGTGAATTATCTTAGACCGGATATAAAGAGAGGAAACATAACTCCAGACGAAGATGATCTTTTAATAAGGTTACATTCACTTCTTGGTAATAGATGGTCACTTATAGCCGGAAGATTACCGGGAAGAACGGACAATGAAATAAAAAATTATTGGAACACTCATCTTCTTAAAAAGATTCAAAGAAATCAACAACAAACATGTGATGTTAAAATAGATTGCGATGAACAACAGCAACAACAATCCAAGAAAAACAACAACATCAAGAAGAAGGACAACAATAACAACAAGAAAAAGAAAAGTGACATGAAAAAAGATGCAAAAAATGATAATCATCAAGTGGAAGAGAAAATTAAAGTTTATTCACCAAAACCCATTAGACTAAAGGCTTCAAATTTACCAAGAAGAGATAGTGATAATTCATTATTTACTTTTGAATCAAATTCATCAATTGGTAGCCAAGAAAAAGAAGGAACAGAACAACATGTGAGGAACAGAACAACATGTGATAATGTTGTTTTTGAGGTTGGTGTGAATGGTGAAAATGAATTTGTTAACGCTGACATGTTAGATATTGAATGCGAATCATATTTCGACACGTGTGGTGTTGTTGATCATGGAAAACTAGAGAGACTCTATGATGAATATTTGCAACTTTTGAGCATGGAAGATTGGAATTACGAGTTTGATGCTTCTTTTGCTCAATCCTTCTTTGATTCAAGCAGTGATATTAATATTTAA 909 0.3399 MGRAPCCAKVGLQKGPWTTKEDALLTKYVQAHGEGKWKSLPKKAGLLRCGKSCRLRWVNYLRPDIKRGNITPDEDDLLIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLLKKIQRNQQQTCDVKIDCDEQQQQQSKKNNNIKKKDNNNNKKKKSDMKKDAKNDNHQVEEKIKVYSPKPIRLKASNLPRRDSDNSLFTFESNSSIGSQEKEGTEQHVRNRTTCDNVVFEVGVNGENEFVNADMLDIECESYFDTCGVVDHGKLERLYDEYLQLLSMEDWNYEFDASFAQSFFDSSSDINI* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1477 302 MobiDBLite consensus disorder prediction 141 177 - -
Tpr5g1477 302 PANTHER MYB TRANSCRIPTION FACTOR 1 285 - -
Tpr5g1477 302 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 285 - -
Tpr5g1477 302 CDD SANT 16 61 IPR001005 -
Tpr5g1477 302 Coils Coil 130 150 - -
Tpr5g1477 302 Gene3D - 14 66 - -
Tpr5g1477 302 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tpr5g1477 302 MobiDBLite consensus disorder prediction 133 177 - -
Tpr5g1477 302 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr5g1477 302 Gene3D - 69 140 - -
Tpr5g1477 302 CDD SANT 71 112 IPR001005 -
Tpr5g1477 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tpr5g1477 302 SMART sant 66 114 IPR001005 -
Tpr5g1477 302 SMART sant 13 63 IPR001005 -
Tpr5g1477 302 Coils Coil 153 173 - -
Tpr5g1477 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tpr5g1477 302 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tpr5g1477 302 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr5g1477 302 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1477 Tpr-Chr5 28107087 28109821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1477 1 116 MYB Transcription Factor Family AT5G49330 75.000 1.42e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr5g1477 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1477 K09422 - gmx:100101857 303.138