Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1468 ATGGCACATCTGGAGTGTAATCTAAGGGCCCCAGGAACTTCTCAACAAGAAAAAGGAGAGAAAAATGATGAGCTGTATGGAGAGTTATGGAAGTTATGTGCAGGTCCTTTGGTGGACGTTCCTAATATTAGTGCGAGAGTTTACTACTTTCCGCAGGGTCATATGGAACAACTGCAAGCATCTACTAATCAAGAATTGAACCAAGAAATTCCTCATTTCAATCTACCGTCGAAGATGTTATGCCGTGTTGTTAATCTTCGGTTGATGGCTGAGCAAGAAACTGATGAGGTTTATGCTTGTATTGCTTTGCTTCCAGAATCAGATCAGCAGACTGAGCCTGTTGATCCTGAACTGATTCCTCCCGAGTCTCCAAAACAGAAGTTTCACTCATTTTGCAAAATACTAACGGCTTCTGATACTAGCACACATGGGGGATTTTCTGTTTTGAGGAAGCATGCTACTGAGTGCTTGCCACCATTGGACATGACACAAGCAACTCCAACTCAGGAGCTTGTAGCAAAAGATCTCCATGGATTTGAGTGGAAGTTTAAGCACATATATAGAGGTCAACCAAGGAGGCACTTGCTCACAACTGGCTGGAGTACATTTGTCGCCTCCAAAAGATTGGTGGCCGGAGATGCTTTTGTTTTCCTAAGGGGAGAGGACGGGCAACTGAGAGTTGGCGTTAGGCGTATGTCTAAACAGCATTGTCCTATGCCTTCATCTGTGATATCAAGCCAAAGCATGAATCTCGGAGTGCTTGCAACTGCTTCTCATGCTCTTATGACTCAAACCATGTTTGTTGTTTATTACAAACCAAGGACTAGTCAGTTTATTGTTGGTTTGAACAAGTATTTGGAGGCAGTCAACAATTATAGGTTTACTGTTGGTATGAGATTCAAGATGAGATTTGAAGGAGATGACTCACCCGAAAGAAGATTTTCTGGTACTATTGTTGGGGTTGGGGATTTATCTGCTGGATGGTCGAATTCTCAATGGAGATCGTTGAAGGTTCAATGGGATGAAGCGGCAACAACTCCAAGACCAGAGAGAGTTTCTCCATGGGAGATAGAACCTTTCACAGCTTCTCCTTCTTTGAATGTCACTCAACCATCAGCCAAGAGCAAAAGATCTCGGCCCGCCGATGTTTCATCTAGTGGTTTTTGGTATCCTGGGGCTGGATCGTCCCAGGCTCATGAGCATACCCAATTGGTCGGTGCTTCCGAAGTCCAAGCCAAAGAGAATCATATCGTAACTTCTAGAGTCTCAGTGGAAGGAATTTGGCCTAATTCACCATATATGAATGTTACTTCCAACCCTTATGCATCTAGACCGGTCGACGGCCCCACATGCGATCATCCAGTCAAAGACGCAAACAAGACTTCGAACCCCCTAGATTGCTGGCTATTTGGAGTTAACTTGAACAAAAACAACAAATGCAACAATGTTAATCCTTGTTTAGAAAAAGAACATGGATTTCCAAATTTAGCCAATGTCACTACTAGTGGTCCCAAGGAATCTATCCTTACAAATGCATGTGAAACTGAAAAGGTTCAGAGTCCTAACAATTCATTGTCTACCAAAGGGCAGCAGAAGAAAATAATTTGTGATGTATCATCAAATGAATGGCAGAACAAGCTGGCCACTGTACCATCCATGAGAACAAGGACTAAGGTGCAAATGCAAGGTGTAGCTGTTGGTAGAGCACTTGACTTAACCATGTTAAGTGGTTATGATGAACTCATTGATGAAGTTGAGAAACTATTTGATATCAAAGGAGAGCTACGTTCACAAAACAAATGGCGAGTTACTTTCACTGATAATGAAAATGACATGATGCTTGTTGGTGATGATCCATGGCCGGAATTTTGCAACATTGTGAAAAAGATTTTCATTTGTTCAAAAGAGGATTTGAAGAAAATGAAATGCAAGCTACCTAACTCTTCATTAGAGATGGAAGAGACATTGTTTAGCTTAGATTCACAAAATAGGGATGAGAATTAA 2004 0.4192 MAHLECNLRAPGTSQQEKGEKNDELYGELWKLCAGPLVDVPNISARVYYFPQGHMEQLQASTNQELNQEIPHFNLPSKMLCRVVNLRLMAEQETDEVYACIALLPESDQQTEPVDPELIPPESPKQKFHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMTQATPTQELVAKDLHGFEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFLRGEDGQLRVGVRRMSKQHCPMPSSVISSQSMNLGVLATASHALMTQTMFVVYYKPRTSQFIVGLNKYLEAVNNYRFTVGMRFKMRFEGDDSPERRFSGTIVGVGDLSAGWSNSQWRSLKVQWDEAATTPRPERVSPWEIEPFTASPSLNVTQPSAKSKRSRPADVSSSGFWYPGAGSSQAHEHTQLVGASEVQAKENHIVTSRVSVEGIWPNSPYMNVTSNPYASRPVDGPTCDHPVKDANKTSNPLDCWLFGVNLNKNNKCNNVNPCLEKEHGFPNLANVTTSGPKESILTNACETEKVQSPNNSLSTKGQQKKIICDVSSNEWQNKLATVPSMRTRTKVQMQGVAVGRALDLTMLSGYDELIDEVEKLFDIKGELRSQNKWRVTFTDNENDMMLVGDDPWPEFCNIVKKIFICSKEDLKKMKCKLPNSSLEMEETLFSLDSQNRDEN* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1468 667 PANTHER AUXIN RESPONSE FACTOR 11 10 425 - -
Tpr5g1468 667 PANTHER AUXIN RESPONSE FACTOR 11 452 647 - -
Tpr5g1468 667 Pfam Auxin response factor 257 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tpr5g1468 667 Pfam AUX/IAA family 552 590 IPR033389 -
Tpr5g1468 667 Pfam AUX/IAA family 597 637 IPR033389 -
Tpr5g1468 667 Gene3D - 550 642 - -
Tpr5g1468 667 MobiDBLite consensus disorder prediction 1 20 - -
Tpr5g1468 667 Pfam B3 DNA binding domain 131 231 IPR003340 GO:0003677
Tpr5g1468 667 Gene3D - 128 232 IPR015300 -
Tpr5g1468 667 SMART B3_2 131 233 IPR003340 GO:0003677
Tpr5g1468 667 ProSiteProfiles PB1 domain profile. 554 635 IPR000270 GO:0005515
Tpr5g1468 667 CDD B3_DNA 129 231 IPR003340 GO:0003677
Tpr5g1468 667 Gene3D - 293 365 - -
Tpr5g1468 667 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 452 647 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tpr5g1468 667 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 425 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tpr5g1468 667 SUPERFAMILY CAD & PB1 domains 549 630 - -
Tpr5g1468 667 SUPERFAMILY DNA-binding pseudobarrel domain 122 260 IPR015300 -
Tpr5g1468 667 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1468 Tpr-Chr5 27954540 27960186 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1468 25 652 B3 DNA Binding Superfamily AT4G23980 55.070 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tpr5g1468 B3 1.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1468 K14486 - gmx:100790981 983.786
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1468 5 27954540 27960186 Tpr5g1468 5 27954540 27960186 ECH