Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1441 ATGGGCATCTTGAAGGTCCTTCTTTACTTAATATTTCCTGTCATACATGCCTTAAACGATTGCCCAGTTTCTTTATGTGGTAACTTTAGTTTACCTATTCGTTTTCCCTTTATACTAAAAGGTGAGCAATCTCCTTATTGTGGTTATCCTGGTTTCAACTTAATTTGTTCAAATCAAAGAAAATCATCAGTTCTAGAGCTTCCTTATTCTGGCAAATTCTATGTACGCAACATAAATTATCTCACACAACAGATACAACTCTATGATCCTGATAATTGTCTTCCGAAACGTCTTCTAAGTCTCAATTTTTCAAATTCTCCTTTCATTGCTACTTTTAGTCGTGACTACACCTTTTTAAGCTGTTCATCTCAGAATATATCTCAGAATTTAGGGTCACAATTCATTCCCATTGATTGTCTTAGTAATTCAACATATTTTGTATCAGCTATCCTTTCAGTGAATTTGGTCAATTCACTTCCTGGGTCTTGTTCTGTTATCAAACGGCTTTTAGTTCCAATTGCAAGACAAGAACGATTCGGAGAAAAACTCAGAGATGATCTTAATGCAGATCTTCAATTAACATGGGATAAACCTGACTGCAATTTTTGTGAAACACATGGGCTAATGTGTGGATTAGAAAGCATTTACAACAATCAAGTTGTTTGTATGTCTGATTACCAAGAAGGTACATCGCGACAAGGACTTAAAGTTTTCAGAATCATAGCATTATGTATTACTGGACCAGCTCTAATCTTTGTTATGTTAATGGCATCTTGTGTGTGCTACAATGATAGAATAGCCAACATTACCAGAAATGCTGCTTCTCGGTCAGCACCAGCTGCAATATCACCACAACCTGAAGTCACAATAGTGACAGGTCTAGACGAATTGACAATTGAATCTTATGAGAAAGTAGTTCTTGGGGAGAGTCGACGCGTACCTGGACCAAATGACGGAAGTTGTTGGATATGCTTATCAGAATACAATAGTAAAGAGACAATAAGATGCATTCCTGAATGCAAACATTGTTTTCATGCTGATTGCATTGATGAGTGGCTCCGTATGAATGTTACATGCCCTGTTTGTCGTAATTCTCCTGCTCCTTCTCCTCTTAATGTTGCTTCTAGTAATGTTTGA 1137 0.3685 MGILKVLLYLIFPVIHALNDCPVSLCGNFSLPIRFPFILKGEQSPYCGYPGFNLICSNQRKSSVLELPYSGKFYVRNINYLTQQIQLYDPDNCLPKRLLSLNFSNSPFIATFSRDYTFLSCSSQNISQNLGSQFIPIDCLSNSTYFVSAILSVNLVNSLPGSCSVIKRLLVPIARQERFGEKLRDDLNADLQLTWDKPDCNFCETHGLMCGLESIYNNQVVCMSDYQEGTSRQGLKVFRIIALCITGPALIFVMLMASCVCYNDRIANITRNAASRSAPAAISPQPEVTIVTGLDELTIESYEKVVLGESRRVPGPNDGSCWICLSEYNSKETIRCIPECKHCFHADCIDEWLRMNVTCPVCRNSPAPSPLNVASSNV* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1441 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 368 IPR013083 -
Tpr5g1441 378 SUPERFAMILY RING/U-box 320 366 - -
Tpr5g1441 378 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 372 - -
Tpr5g1441 378 ProSiteProfiles Zinc finger RING-type profile. 321 363 IPR001841 -
Tpr5g1441 378 Pfam Ring finger domain 320 363 IPR001841 -
Tpr5g1441 378 Pfam Wall-associated receptor kinase galacturonan-binding 21 89 IPR025287 GO:0030247
Tpr5g1441 378 SMART ring_2 321 362 IPR001841 -
Tpr5g1441 378 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 5 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1441 Tpr-Chr5 27541926 27544331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1441 21 369 C3H Transcription Factor Family AT2G46495 44.663 9.23e-88 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1441 - - aprc:113851081 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1441 5 27541926 27544331 Tpr5g1441 5 27541926 27544331 ECH
Tpr6g0074 6 611282 614226 Tpr5g1441 5 27541926 27544331 PCT