Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1439 ATGGTTGTGTTGTGTGAACAAAGTAGCCATAAAAAACTCTTTCTTAATTATCAAGGTTGCATTGCATGCAACATTTTATTTGCTTTTATAAGTTTTAAACTCTTAATTCTTCTCTCTGCTTTGTTTCCTCCTATACAGGGTTGCAGTGAATCTTCAAATATTGTTACTATTTATTGCAGCAGTTTAATCATCATGACTCCAAAGGAAAAGAAATTTGTGAGATTTGAAGATTGGAAATCGGAATCATCATCTTTTAATTTTTCACAATATGATTCTTCAATTGATGGATTTGAAAAAAGAAAATCAAAATCAACTGTTACTCCTACAAAAAATAATGAATCATTGGACAAACAAGCTCCTAGGTGTAGTGTTCTTGATCCACAAGGTCCACTACTTCAAAAATGGAACAAGATCTTTGTAATAACATGTGTGATGGCAGTATCTATGGATCCATTGTTCTTTTACATCCCTGAGATTGATGACAAAAGAAAATGTCTTAATTTGAATGGAACATTGAAGATTACTGCTAGTGTTCTTCGCACGTTTTTCGATCTTTTCTACATTCTTCGTATCGTCTTTCAGTTTCGAACTGGTTTTATTGCACCTTCTTCGCGCGTTTTTGGAAGGGGAGAACCGGTTGATGATCCTTTTGCTATAGCAAAGAGATACTTAAGTTCTCATTTCATCATTGACATTCTGTCAATTCTTCCACTTCCTCAGATGGTGATTTTAGCTATGATTCCAATTCGACAATGCTCAGTTCCTTATATAGCAAAGGATTGGTTGAAGTATACAATAATAACACAATATGCGCCGAGACTTCTGCGAATTTATCCATTGTTCAAAGAAGTAACAAGCACTTCTGGTATATTAACTGAGACAGCTTGGGCTGGAGCTGCTTATAATCTTTTTCTCTATATGCTAGCAAGTCATGTTGTTGGGGCTTTTTGGTATTTGTTTTCGATAGAATCCGAGTTGCGGTGTTGGCGCAGACAATTGAAGGATACTACATTCTTTGATGATTCCTATCTGAGCTGTGGACGAGTCAATCCGACACTTTTTTCGATTCTCAACAATTCTACTACTTGTCCTTACAAAGATCCCGATGATATCATTGATCCATCAGTTTTCAATTTTGGAATATTTATCGATGCGCTAATGTCGCGTGTGGTAGAATTGAATACAAGCTTTCATCATAAATTCTTCTACTGCTTTTGGTGGGGTTTACGCAATTTAAGTTCTGTTGGGCAGAATCTGAAGACAAGCACTTATATTGGGGAGATAATCTTTGCTATCTTCATCGCCGTCTTTGGATTAGTTCTATTCGCATTACTTATAGGAAACATGCAGAAATATCTACAATCTACAACTGTTAGAGTTGAAGAAATGAGAATCAAAAGGAGAGATGCAGAACAATGGATGTGCCATCGTATGCTACCGGATTACATGAAGGAAAGAATTCGACGGTATGAACAATATAAATGGCAAGAGAATAGAGGTGTCGAAGAGGAAACTTTGATTCGTAACCTCCCTAAAGATCTCAGAAGAGACATAAAGAGACATCTTTGCTTAGATTTACTTAAAAAAGTGCCGATTTTCGGGAGCATGGATGAAAAATTGTTAGATGCAATGTGTGATAAACTGAAACCAGTCCTTTATACCGAGAGAAGTTGTGTTGTTCGTGAAGGTGATCCGGTGGACGAAATGCTCTTCATCATGCGTGGAAAACTTGCGACTGCCACAACAAATGGTGGAAGAACTGGTTTCTTTAACTCTTCTGAGCTTAAGACTGGTGATTTTTGTGGAGAGGAGCTTCTAACTTGGGCCTTGGATCCTACCCAGTCCTCGAACTTACCTATTTCGACTAGTACTGTGGAAACTTTTACAGAAGTTGAAGCTTTTGCTCTCATGCATGATGACTTGAAGATTGTTGCTTCACAATTTCGCCGTCTTATTAATAGAAAACAACTGCAACACACTTTCAGGTTCTATTCCTTGCAATGGAGGTTATGGGGAGCTCGGTTCATACAAGTAGTTTGGCGTCGAAATAGAGAAAAAAGGGCACAGAAATTGTTGCGTCAAGCGGAAGAAAAACAACAAAATACTTCCGAAAATGAGGACGGGACTTCACCAAGCTTTGCATCTTCTATATATGTACAAAGGTTTGCATCCAATGCATTAAAGAACTTAAGAAGTGGCAAAAGAATGCCACAGACACAGAGATTGCTACCACTCTTGCCTAAAAAACCAGCTGAGCCAGATTTCATGACTCAAAAAAACTAG 2283 0.3758 MVVLCEQSSHKKLFLNYQGCIACNILFAFISFKLLILLSALFPPIQGCSESSNIVTIYCSSLIIMTPKEKKFVRFEDWKSESSSFNFSQYDSSIDGFEKRKSKSTVTPTKNNESLDKQAPRCSVLDPQGPLLQKWNKIFVITCVMAVSMDPLFFYIPEIDDKRKCLNLNGTLKITASVLRTFFDLFYILRIVFQFRTGFIAPSSRVFGRGEPVDDPFAIAKRYLSSHFIIDILSILPLPQMVILAMIPIRQCSVPYIAKDWLKYTIITQYAPRLLRIYPLFKEVTSTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSIESELRCWRRQLKDTTFFDDSYLSCGRVNPTLFSILNNSTTCPYKDPDDIIDPSVFNFGIFIDALMSRVVELNTSFHHKFFYCFWWGLRNLSSVGQNLKTSTYIGEIIFAIFIAVFGLVLFALLIGNMQKYLQSTTVRVEEMRIKRRDAEQWMCHRMLPDYMKERIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIKRHLCLDLLKKVPIFGSMDEKLLDAMCDKLKPVLYTERSCVVREGDPVDEMLFIMRGKLATATTNGGRTGFFNSSELKTGDFCGEELLTWALDPTQSSNLPISTSTVETFTEVEAFALMHDDLKIVASQFRRLINRKQLQHTFRFYSLQWRLWGARFIQVVWRRNREKRAQKLLRQAEEKQQNTSENEDGTSPSFASSIYVQRFASNALKNLRSGKRMPQTQRLLPLLPKKPAEPDFMTQKN* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1439 760 ProSiteProfiles cAMP/cGMP binding motif profile. 532 618 IPR000595 -
Tpr5g1439 760 SMART cnmp_10 532 663 IPR000595 -
Tpr5g1439 760 SUPERFAMILY cAMP-binding domain-like 461 650 IPR018490 -
Tpr5g1439 760 Gene3D Jelly Rolls 530 650 IPR014710 -
Tpr5g1439 760 CDD CAP_ED 532 664 IPR000595 -
Tpr5g1439 760 Gene3D Helix hairpin bin 459 523 - -
Tpr5g1439 760 Pfam Ion transport protein 135 460 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tpr5g1439 760 Coils Coil 681 705 - -
Tpr5g1439 760 MobiDBLite consensus disorder prediction 729 760 - -
Tpr5g1439 760 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 70 758 - -
Tpr5g1439 760 SUPERFAMILY Voltage-gated potassium channels 126 454 - -
Tpr5g1439 760 Gene3D - 137 456 - -
Tpr5g1439 760 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 70 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1439 Tpr-Chr5 27527937 27532466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1439 73 755 Ion Channels AT4G01010 61.151 0.0 852
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1439 K05391 - gmx:100795201 1035.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1439 5 27527937 27532466 Tpr5g1439 5 27527937 27532466 ECH