Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1436 ATGCCCACAAAAATCTTCTTATCACAACTTCGTCTTCTTCACTTCCAACCAATGAAACTTCACTCTCCTCAATTTCTATCTCAAACTCTCTTCAAATTCTCTCATCTTCCACTCCAAAACGCTGCGTTTCGTCCTTTCTCTGTTAAACCAGATAGAATTAGGGTTTCCAAAAGTCTCGTCGACGACGAGGCTGAGCTTAGTAATTGGGTTGATGATTTGCGAACCGGTCGAGCTGAGACCATGAAACCTGCTCAGAGAGTGAGTTCTGGTCGTGAAACGGGTGATAGAGAGGGTGGGTTTCGGCCACGAAAGAGTAGTGTTAGTAGAGGTTCAGGTTCTAATTTTGTGAAGAGAAAACCTAATTTGAATTCGAATTCCAATAGAAGATTTGGATTGAGTAGTGATGATGATGGAGGTGATAATGAGGTGGTTGAAAGAGTGGGTTCTGGTCGTGAACCTGTTGATAGAGACGGTGGGTTTCGGCCACAGAAGAGTAGTGTTAGTAGAGGTCCAGGTTCTAATTTTGGGAAGAAAAAACCTTATTTGAATTCGAATTCGAGGAGAAGATTTGGATTGAGTAGTGATAATGATGATGATGAGGAGGAGGTGGTTGAAAGAGGGAAGTTTAAGGGTGGTGGTGGTTCTGGAAGTATTAGTGAATTTCTTAGTGAAGATGATGTTGAAGGAGAAACAGAGAGTGATGATGATGATGAGGAGGAGGAGGAGATAGTAAAGAAAAGTAGAAGTGTTTTGTTTGGTAAACAAAATGGGGTTTCAACAACTCCTAGGCCTGTTTCATCTGGTGGAAGTGATTCTTATTTAAGTGATTCTAGATTCGATCAATGTTCAGTTTCACCGTTGTCATTAAAAGGAATCAAGGATGCTGGATATGAGAAAATGACTGTTGTGCAGGAGGCAACACTTCCAGTAATTCTAAAAGGTAAGGATGTCCTGGCCAAGGCTAAAACAGGCACGGGAAAAACAGTAGCCTTTTTGCTTCCAGCCATTGAAGTTGTTGTGAAGTCTCCACCAACTGATCGTGATCAAAGGCGGCCACCAATTTTTGTTCTTGTCATATGTCCTACTCGAGAGCTTGCATGTCAAGCTGCTGCTGAAGCCACTAAACTGCTTAAGTATCATCCTACCTTAGGTGTTCAAGTTGTGATCGGAGGAACAAGACTTGCTTTAGAACAGAAACGCATGCAAGCAAATCCTTGCCAGATCCTTGTTGCTACCCCTGGAAGGCTTAGAGATCATATTGAAAATACTGCTGGTTTTGCATCTAGGCTTATGGGGGTGAAAGCCTTGGTGCTTGATGAAGCTGATCATTTACTGGACATGGGATTTCGCAAAGATATTGAGAAAATAATTGCTGCAATCCCTAAACAACGACAAACACTTATGTTTTCTGCAACCATTCCAGACGAGGTGCGTCAAGTCTGTCATGTTGCTTTGAAAAGGGATTTCGAATATATTAATACAGTTCAAGAGGGTTCTGAGGATACACATGCACAGGTCCGCCAAATGCATTTAGTTGCACCATTAGACAAGCATTTCCATTTACTCTATGCTATTCTGAAGGAGCACATTGCAGATGATGTTGACTATAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACAAGACTTGTTGCTGATCTCCTTGGGGAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACTAGAGTTTCTGACGAATTCCGGAAGTCAAAGGGTCTCATCCTGGTTACTTCAGATGTATCTGCACGTGGAGTTGATTATCCAGATGTTACTCTTGTTGTACAGGTTGGCGTGCCGGCTGATAGAGAACAGTATATACATCGACTAGGTAGAACAGGGAGAAGAGGAAAAGAAGGGCAGGGCATACTGCTATTAGCTCCTTGGGAAGAGTTCTTCTTATCTACGGCAAAAGATTTGCCTATTGGGAAAGCTCCAGTACCTTTAGTTGATCCTGACACCAAGAAAAAGGTGGAAAGGGCTCTATCCAATGTGGAGATGAAGAATAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTACAACTCTAACAAGAAAGTGGGGAAAGATAAGTACAGGTTAGTCGAGCTTGCAAACGAGTTCAGTCGATGCATGGGTCTCGATACCCCTCCAGCCATATCTAAGCTTGTCCTCGGCAAGATGGGTCTTAAAAATGTCCCTGGTTTACGTTCCAAATAG 2238 0.4254 MPTKIFLSQLRLLHFQPMKLHSPQFLSQTLFKFSHLPLQNAAFRPFSVKPDRIRVSKSLVDDEAELSNWVDDLRTGRAETMKPAQRVSSGRETGDREGGFRPRKSSVSRGSGSNFVKRKPNLNSNSNRRFGLSSDDDGGDNEVVERVGSGREPVDRDGGFRPQKSSVSRGPGSNFGKKKPYLNSNSRRRFGLSSDNDDDEEEVVERGKFKGGGGSGSISEFLSEDDVEGETESDDDDEEEEEIVKKSRSVLFGKQNGVSTTPRPVSSGGSDSYLSDSRFDQCSVSPLSLKGIKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPAIEVVVKSPPTDRDQRRPPIFVLVICPTRELACQAAAEATKLLKYHPTLGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFASRLMGVKALVLDEADHLLDMGFRKDIEKIIAAIPKQRQTLMFSATIPDEVRQVCHVALKRDFEYINTVQEGSEDTHAQVRQMHLVAPLDKHFHLLYAILKEHIADDVDYKVLVFCTTAMVTRLVADLLGELNLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVVQVGVPADREQYIHRLGRTGRRGKEGQGILLLAPWEEFFLSTAKDLPIGKAPVPLVDPDTKKKVERALSNVEMKNKEAAYQAWLGYYNSNKKVGKDKYRLVELANEFSRCMGLDTPPAISKLVLGKMGLKNVPGLRSK* 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1436 745 MobiDBLite consensus disorder prediction 89 103 - -
Tpr5g1436 745 Pfam Helicase conserved C-terminal domain 523 630 IPR001650 -
Tpr5g1436 745 MobiDBLite consensus disorder prediction 252 275 - -
Tpr5g1436 745 CDD DEADc_MSS116 284 493 - -
Tpr5g1436 745 Gene3D - 501 729 IPR027417 -
Tpr5g1436 745 Gene3D - 237 492 IPR027417 -
Tpr5g1436 745 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 308 491 IPR014001 -
Tpr5g1436 745 CDD SF2_C_DEAD 506 639 - -
Tpr5g1436 745 SMART helicmild6 549 630 IPR001650 -
Tpr5g1436 745 Pfam DEAD/DEAH box helicase 302 479 IPR011545 GO:0003676|GO:0005524
Tpr5g1436 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 645 IPR027417 -
Tpr5g1436 745 MobiDBLite consensus disorder prediction 106 132 - -
Tpr5g1436 745 SMART ultradead3 296 509 IPR014001 -
Tpr5g1436 745 PANTHER RNA HELICASE 245 743 - -
Tpr5g1436 745 PANTHER RNA HELICASE 33 76 - -
Tpr5g1436 745 MobiDBLite consensus disorder prediction 223 241 - -
Tpr5g1436 745 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 526 686 IPR001650 -
Tpr5g1436 745 MobiDBLite consensus disorder prediction 166 190 - -
Tpr5g1436 745 MobiDBLite consensus disorder prediction 133 159 - -
Tpr5g1436 745 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 277 305 IPR014014 GO:0003724
Tpr5g1436 745 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 33 76 - -
Tpr5g1436 745 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 245 743 - -
Tpr5g1436 745 MobiDBLite consensus disorder prediction 77 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1436 Tpr-Chr5 27426008 27431907 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1436 277 658 Eukaryotic Initiation Factors Gene Family AT3G19760 27.820 7.77e-44 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1436 - - gmx:100799999 957.977