Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1435 ATGAGCCCTGCTGCGCAGACTGTGGCGGCTGATAACAACGGTGGGTTCCAGTCACACAAGAAGAATAAGAACAAGAAGAAGAATGTTGATGTTCCTTCTTCATTAGGGAAAAGAAAAGGTGATGATGATTTCAGAAAGGAAAAACCTAATAAGAAGAAGTCCAAAAAAAGGTCTAAGTTGAGTAGTGATAATGATGATGATGATGATAATAAAGTTGTAGCAGTAGAAAATGGTGGTGGTGCTGTTAGTGGTGGTTCTGGAATTATTGGTGGAGATTCTTATTTAAGTGATTCCAGATTTGACCAGTGTTCAGTCTCTCCACTGTCATTAAAAGGAATCAAGGATGCTGGATATGAGAAAATGACCATCGTCCAGGAGGCAACACTTCCAGTAATTCTTAAAGGTAAGGATGTCCTGGCCAAGGCTAAAACAGGAACGGGAAAAACAGTAGCCTTTTTGCTTCCATCAATTGAAGCTGTTGTGAAGTCTCCACCAAGTGATCGTAATCAAATGCGTAAACCAATTCTTGTTCTTATCATATGCCCAACACGAGAGCTTGCATGTCAAGCTGCTGCAGAAGCCAGTAAACTGCTCAAATATCATCCTACCATTGGTGCTCAAGTTGTGATTGGAGGAACAAATCTTAGTGTAGAACAGAAACGAATTCAAAAAAATCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGAGATCACATTGATAGTACTGCTGGTTTTCCTTCTAGGCTTATGGGGGTTAAGACCTTGGTGCTTGATGAAGCTGATCATTTACTAGACATGGGATTTCGTAAAGATATTGATAAAATAATTGCTGCAGTTCCTAAACAACGACAAACACTTATGTTTTCTGCAACCATTCCGGACGCGGTTCATCAAGTTTGTAAAATTGCGTTGAAAAAGGATTTTGAATTTATTAATACAGTTGAGGAGGGTACTGAAGAGACACATGCAAAGGTCCGCCAGATGCATTTAATTGCCCCGCTAGACAAGCATTTCTCTTTACTCTATGTTATTCTGAAGGAGCACATTACCGATGATGTTGACTATAAGGTTCTTGTTTTCTGTACAACTGCTATGGTCACAAGACTTGTTGCTGATCTCCTTGGGAGGTTGAACTTGAATGTGCGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTTTCTGATGAATTCCGGAAGTCAAAGCGTCTCATCCTAGTTACTTCGGATGTATCTGCACGTGGAGTTGATTATCCAGATGTTTCTCTTGTTATACAGGTTGGTCTACCAGCTGATAAGCAACAGTACATACATCGACTAGGTAGAACAGGGCGAAAAGGAAAAGAAGGCCAGGGCATACTGCTACTAGCTCCTTGGGAAGAGTTCTTTTTAGATTCCGCAAAAGATTTGCCTATTGAGAAAGCTCCAGTACCTTCTGTTGATCCTGAGACTAAGAAAAAGGTGGATAGGGCTATATCCACTGTTGAGATGGATAATAAAGAAAGAGCATATCAAGCATGGCTTGGTTACTACAATTCTAACAAGAAAGTGGGGAGAGATAAGCGTAAGTTAGTGGAGCTTGCTAACGAGTTCAGTCGAAGCATGGGGCTTGATACCCCACCAGCTGTTGCCAGTCTTGTCCTTGGCAAGATGGGTCTTAGAAATGTCCCTGGTTTACGTTCCAAATAG 1701 0.4133 MSPAAQTVAADNNGGFQSHKKNKNKKKNVDVPSSLGKRKGDDDFRKEKPNKKKSKKRSKLSSDNDDDDDNKVVAVENGGGAVSGGSGIIGGDSYLSDSRFDQCSVSPLSLKGIKDAGYEKMTIVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEAVVKSPPSDRNQMRKPILVLIICPTRELACQAAAEASKLLKYHPTIGAQVVIGGTNLSVEQKRIQKNPCQILVATPGRLRDHIDSTAGFPSRLMGVKTLVLDEADHLLDMGFRKDIDKIIAAVPKQRQTLMFSATIPDAVHQVCKIALKKDFEFINTVEEGTEETHAKVRQMHLIAPLDKHFSLLYVILKEHITDDVDYKVLVFCTTAMVTRLVADLLGRLNLNVREIHSRKPQSYRTRVSDEFRKSKRLILVTSDVSARGVDYPDVSLVIQVGLPADKQQYIHRLGRTGRKGKEGQGILLLAPWEEFFLDSAKDLPIEKAPVPSVDPETKKKVDRAISTVEMDNKERAYQAWLGYYNSNKKVGRDKRKLVELANEFSRSMGLDTPPAVASLVLGKMGLRNVPGLRSK* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1435 566 Gene3D - 46 313 IPR027417 -
Tpr5g1435 566 SMART ultradead3 117 330 IPR014001 -
Tpr5g1435 566 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 346 492 IPR001650 -
Tpr5g1435 566 CDD DEADc_MSS116 105 314 - -
Tpr5g1435 566 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 66 564 - -
Tpr5g1435 566 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 466 IPR027417 -
Tpr5g1435 566 CDD SF2_C_DEAD 327 460 - -
Tpr5g1435 566 Gene3D - 321 545 IPR027417 -
Tpr5g1435 566 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 129 312 IPR014001 -
Tpr5g1435 566 Pfam DEAD/DEAH box helicase 124 300 IPR011545 GO:0003676|GO:0005524
Tpr5g1435 566 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 98 126 IPR014014 GO:0003724
Tpr5g1435 566 PANTHER RNA HELICASE 66 564 - -
Tpr5g1435 566 Pfam Helicase conserved C-terminal domain 347 451 IPR001650 -
Tpr5g1435 566 SMART helicmild6 370 451 IPR001650 -
Tpr5g1435 566 MobiDBLite consensus disorder prediction 1 17 - -
Tpr5g1435 566 MobiDBLite consensus disorder prediction 27 49 - -
Tpr5g1435 566 MobiDBLite consensus disorder prediction 1 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1435 Tpr-Chr5 27418167 27425728 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1435 98 479 Eukaryotic Initiation Factors Gene Family AT3G19760 28.205 3.76e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1435 - - gmx:100799999 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1435 5 27418167 27425728 Tpr5g1435 5 27418167 27425728 ECH