Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1410 ATGGTTTACGTTAAGGCTCAGAAATCTAAGGCTTACTTCAAGAGGTACCAAGTCAAGTTCAAGAGAAGAAGAGAGGGTAAGACTGATTACCGTGCTAGGATTCGGTTGATTAATCAAGATAAGAACAAGTACAACACCCCGAAGTATCGATTTGTTGTTCGATTCACCAACAAAGATATTATTGCACAAATAGTATCTGCTAGCATTGCTGGTGATATTGTTCTCGCTGCTGCATATGCTCATGAGCTGCCACACTTTGGTCTTGAAGTAGGCCTTACAAATTATGCTGCAGCTTACTGCACTGGACTCCTCTTGGCCCGTCGAGTTCTCAAGACACTTGAGATGGACGAGGAGTATGAGGGGAATGTTGAGGCTAGTGGAGAGGATTATTCAGTGGAGCCTGCTGACTCCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTCGTTAAGACCACAACTGGAAACCGTGTCTTTGGTGCCCTGAAGGGAGCACTGGACGGGGGTTTGGATATTCCCCACAGCGACAAACGGTTTGCTGGTTTTGACAAGGAAAAGAAAGAGCTTGATGCTGAGGTTCACCGCAAATATATCTTTGGTGGACATGTTGCTGCTTACATGAAGACTTTGATTGAAGATGAACCAGAGAAATACCAGACCCACTTTAGCGAGTATATTAAGATAGGAATTGAGGCTGATGGTCTTGAGGAGCTGTACAAGAAGGTTCATGCTAACATTCGTGCAGATCCTTCCATTAAGAAATCAGAGAAGCAGCCTCCAAAGGAGCACAAGAGGTTTAATCTGAAGAAGCTTACCTACGAGGAGAGGAAATCCAAGTTGATTGCACGCTTGACAGCTCTTAATGCTGCTGTTGGTGATGATGATGAGGACGATGATGAGTGA 903 0.4507 MVYVKAQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSASIAGDIVLAAAYAHELPHFGLEVGLTNYAAAYCTGLLLARRVLKTLEMDEEYEGNVEASGEDYSVEPADSRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDAEVHRKYIFGGHVAAYMKTLIEDEPEKYQTHFSEYIKIGIEADGLEELYKKVHANIRADPSIKKSEKQPPKEHKRFNLKKLTYEERKSKLIARLTALNAAVGDDDEDDDE* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1410 300 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 297 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Tpr5g1410 300 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 175 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Tpr5g1410 300 PANTHER PROTEIN L5, PUTATIVE-RELATED 1 297 - -
Tpr5g1410 300 Pfam Ribosomal L18 C-terminal region 235 288 IPR025607 -
Tpr5g1410 300 Gene3D - 1 291 - -
Tpr5g1410 300 Hamap 50S ribosomal protein L18 [rplR]. 14 246 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Tpr5g1410 300 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Tpr5g1410 300 PRINTS Ribosomal protein L5 signature 43 62 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Tpr5g1410 300 PRINTS Ribosomal protein L5 signature 84 104 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Tpr5g1410 300 PRINTS Ribosomal protein L5 signature 144 163 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Tpr5g1410 300 PRINTS Ribosomal protein L5 signature 164 183 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Tpr5g1410 300 PRINTS Ribosomal protein L5 signature 206 226 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Tpr5g1410 300 CDD Ribosomal_L18_L5e 41 170 - -
Tpr5g1410 300 SUPERFAMILY Translational machinery components 11 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1410 Tpr-Chr5 27067914 27070673 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1410 1 292 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 82.534 0.0 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1410 K02932 - gmx:100805868 535.413