Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1393 ATGACTGCAAATAATGGTAGAGGAAGTAATCAAGAGCATAAGAGAAAAATCAATGAGCCTTTACCAAGGTCATGCATACCTAGAAATGTTACTTCTTTAGCTGGATCTGGTCCTACTAGTACTAGTTTTTGTTCAACTACAGATCCTAAACACATTGTTGAAAAGTTACATGTTAGGAATTATAAGAACTTAAATCATCAATTAGCTTTTGAGTCGAATTATAGTGATAGCTTAAGTAGAGAAATCCCTTTAAAGGTTAAAGGAGGACTTAAGGGAATTGATTCTAGAAAGAATTTGAAGTTGAATCATCAACCAGATAAAGGTTTTGTTAATATGAGCAATATAGAGAATAGATTGAAGGGAAAGGAAATTATTCAGAAAGATTTAGGCAATGTTGTGTCCGGCGCGGAATGTTTTAATGATGAAATCAACTTAAGAGTGTGGATGAAGTCCGAAAGTCGAAAAATGAAGAAATCGGAAAGGTTGTATTTATTTAAACAGATTTTGGAGTTGGTTGATTTTGCACACTCACAAGGATTTGTCTTGCAAGACTTAAAACCGTCTTGTTTCGCCTTATTTCCTTCGAATAAAATTAAATACTTTGGTTCGTATGGCCAACAAGTGTTTGATGACGAAAAATCGTGTTTCACGTTATTTAAGTCATGTCTTAAGGCCATCATGACTTGTAATGTGACAAAGAAAATGCCGTGGGAACATGATACATGTGGTTGTCAAAGTTTGAGTGGTACTAAGAAACAAAAGCTTTGTGAAGAGAGGACATCTCTTAAGCAGCAGCATCACTTCGACTGTAATCATGGCTGTGACACAAACATGTTTATGGAATCAAGTTTGTGCCTAGATGGTTCGAGTTATCAACATGGTTTTGCAGAAGAAAAACAGTTTATTTCTGAAACCATTCAGTTAGAAGAGAAGTGGTATTCTTGTCCAGAAGTGCTTAATGATGGAACTAATACATTTTCATCAAATGTTTATAGTCTTGGAGTTCTTGTTTTTGAGTTGCTATGCAATATTGAGACAGTGGAAGCACATTCAACTGTGATGTTTGATATGCGTCATAGAATCTTACCTCCAAAATTTCTATCACAAAATGCAAAGGAAGCTGGTTTTTGTCTATGGCTTCTTCATCCCGAACCTTCTTCTCGTCCGAATACCAGGATGATTTTAGAATCTGAATTTATACGCGAGTTAGCAGCGGAATTAAATTCTGGAAATACTAATGTCATAGTATCTGAAGATGATGTAACTGACACCGAGGAATTACTGAATTTTCTAACTTCAGTTGGAGAAGAAAAGAAAAAACAAGAAGCCAAATTGGCGGAAGAGTTAAATTGTTTGAATGAAGATATTAAGGAGGTAGAAAGAAAGCATTCATATGGAACTGATTCAGCATTTCATTTGGCTCAATTGAACTATCTACATTTTCAAGATCCATCAAGTACAAATATTAGTAGATATTTTCCAAGTTCATTTGTTGATGAAGCAAGATTTATGAGTAATATAAATCAGCTAGAGAATAGTTACTTCTCGATGAGATTCCAAAGCAGTGATAAAAGTGTGATGGAAAATCGATTGAGATTGCCTCATTTAGAAAAAGTTAGTAACGAGGTAAAGAGAATTCAAGGTTCTATTGGTGGTCTAGGACCCTTCTTTGATGGTATATGCAAATTCGCTCGTTACAGCAAGTTTGAAGAACGTGGAACATTGAGAAATAGTGATCTGCTTAGTTCTGCCAATGTGATTTGTGCCTTAAGTTTTGACCGTGACGAGGATTATATTGCAGCTGGTGGAATTTCAAAGAAAATAAAGATATTTGACGTCAACGCTGCTTCAAGTGATTCTGTAGACATTCAGTATCCTGTTGTTGAGATGACGAACAAATCAAAGCTTAGTTGTGTGTGCTGGAACAGTTATATAAAAAACCATCTCGCGTCTACTGATTATGATGGTGTGGTTCAGATGTGGGATGCAGGCACTGGTCAGCCACTGTCTCAGTACATGGAGCACCAAAAGAGAGCTTGGTCTGTTCACTTTTCAGTATCTGACCCGAAAATGTTTGCCAGTGGAAGCGATGATTGCTCTATCAAACTGTGGAATATCAGCGAGAGAAATTCTATAGGAACCATATTGAGCCCTGCAAATGTATGTTGTGTTCAATTCTCTGAATACTCCACAAATCTTTTATTTTTCGGATCGGCTGATTACAAGGTGTACGGTTATGATCTTCGTAACACTAAAATCCCATGGTGTACATTAGCCGGTCATGGAAAAGCTGTTAGCTATATAAAATTTATAGATGCACAAACAGTTGTGTCTGCTTCCACTGATAACTCTTTGAAGCTTTGGGATCTGAAGAAAACTAGCTCAGCTGAATTGGCATCTGATGCTTGTGACTTAACCTTTAGAGGTCATAGTAATGAAAAGAACTTTGTTGGTTTATCTGTTTTGGATGGATACATTGCATGTGGTTCAGAATCTAATGAGGTATACTGTTATCACAAATATTTGCCGGTGCCAATTGCTTCTCACAGATTCGAGTCAAACGATCCCATTTCTGGTCATTCAAATAGTTTTGACAACAATGGACAATTTGTTTCTAGTGTCTGTTGGAGAAAGAAGTCTAACACGCTTGTTGCAGCCAATTCAGTTGGAATTATAAAACTACTACAGATGGCATGA 2697 0.3648 MTANNGRGSNQEHKRKINEPLPRSCIPRNVTSLAGSGPTSTSFCSTTDPKHIVEKLHVRNYKNLNHQLAFESNYSDSLSREIPLKVKGGLKGIDSRKNLKLNHQPDKGFVNMSNIENRLKGKEIIQKDLGNVVSGAECFNDEINLRVWMKSESRKMKKSERLYLFKQILELVDFAHSQGFVLQDLKPSCFALFPSNKIKYFGSYGQQVFDDEKSCFTLFKSCLKAIMTCNVTKKMPWEHDTCGCQSLSGTKKQKLCEERTSLKQQHHFDCNHGCDTNMFMESSLCLDGSSYQHGFAEEKQFISETIQLEEKWYSCPEVLNDGTNTFSSNVYSLGVLVFELLCNIETVEAHSTVMFDMRHRILPPKFLSQNAKEAGFCLWLLHPEPSSRPNTRMILESEFIRELAAELNSGNTNVIVSEDDVTDTEELLNFLTSVGEEKKKQEAKLAEELNCLNEDIKEVERKHSYGTDSAFHLAQLNYLHFQDPSSTNISRYFPSSFVDEARFMSNINQLENSYFSMRFQSSDKSVMENRLRLPHLEKVSNEVKRIQGSIGGLGPFFDGICKFARYSKFEERGTLRNSDLLSSANVICALSFDRDEDYIAAGGISKKIKIFDVNAASSDSVDIQYPVVEMTNKSKLSCVCWNSYIKNHLASTDYDGVVQMWDAGTGQPLSQYMEHQKRAWSVHFSVSDPKMFASGSDDCSIKLWNISERNSIGTILSPANVCCVQFSEYSTNLLFFGSADYKVYGYDLRNTKIPWCTLAGHGKAVSYIKFIDAQTVVSASTDNSLKLWDLKKTSSAELASDACDLTFRGHSNEKNFVGLSVLDGYIACGSESNEVYCYHKYLPVPIASHRFESNDPISGHSNSFDNNGQFVSSVCWRKKSNTLVAANSVGIIKLLQMA* 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1393 898 ProSiteProfiles Protein kinase domain profile. 28 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr5g1393 898 SUPERFAMILY WD40 repeat-like 585 894 IPR036322 GO:0005515
Tpr5g1393 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 672 714 IPR001680 GO:0005515
Tpr5g1393 898 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 758 791 - -
Tpr5g1393 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 758 798 IPR001680 GO:0005515
Tpr5g1393 898 PRINTS G protein beta WD-40 repeat signature 649 663 IPR020472 -
Tpr5g1393 898 PRINTS G protein beta WD-40 repeat signature 692 706 IPR020472 -
Tpr5g1393 898 PRINTS G protein beta WD-40 repeat signature 776 790 IPR020472 -
Tpr5g1393 898 SMART WD40_4 708 747 IPR001680 GO:0005515
Tpr5g1393 898 SMART WD40_4 577 612 IPR001680 GO:0005515
Tpr5g1393 898 SMART WD40_4 850 896 IPR001680 GO:0005515
Tpr5g1393 898 SMART WD40_4 623 662 IPR001680 GO:0005515
Tpr5g1393 898 SMART WD40_4 665 705 IPR001680 GO:0005515
Tpr5g1393 898 SMART WD40_4 751 789 IPR001680 GO:0005515
Tpr5g1393 898 SMART WD40_4 800 839 IPR001680 GO:0005515
Tpr5g1393 898 Gene3D Transferase(Phosphotransferase) domain 1 141 410 - -
Tpr5g1393 898 MobiDBLite consensus disorder prediction 1 23 - -
Tpr5g1393 898 Gene3D - 557 898 IPR015943 GO:0005515
Tpr5g1393 898 SUPERFAMILY Protein kinase-like (PK-like) 143 404 IPR011009 -
Tpr5g1393 898 PANTHER LIGASE COP1, PUTATIVE-RELATED 140 897 - -
Tpr5g1393 898 PANTHER LIGASE COP1, PUTATIVE-RELATED 25 115 - -
Tpr5g1393 898 Coils Coil 435 462 - -
Tpr5g1393 898 Pfam WD domain, G-beta repeat 667 705 IPR001680 GO:0005515
Tpr5g1393 898 Pfam WD domain, G-beta repeat 757 789 IPR001680 GO:0005515
Tpr5g1393 898 ProSitePatterns Trp-Asp (WD) repeats signature. 776 790 IPR019775 -
Tpr5g1393 898 PANTHER PROTEIN SPA1-RELATED 2 25 115 IPR044630 GO:0009640
Tpr5g1393 898 PANTHER PROTEIN SPA1-RELATED 2 140 897 IPR044630 GO:0009640
Tpr5g1393 898 SMART serkin_6 28 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1393 Tpr-Chr5 26891526 26896410 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1393 669 838 Miscellaneous Gene Families AT5G08390 23.837 1.17e-07 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Tpr5g1393 WD40 0.0072 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1393 K16240 - gmx:100802144 1123.23