Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1366 ATGTCTTCCTCAAACCCTTTCTCTCCACCACCACCACCACCACCACCACTTCCTTACCTCACCAATCTCGGCTTCGGTTACTCCATAGCCATAGCTCTCGGTTTCCTCTTCCTTCTTTCAACCTTAATCCTCTCTTCTTACCTATGTTGTCGTACTTTCCGTAACCGTCATAACCGTCACAACAACAATAACAACAACAACCACCACAGAGATGACGGCGTGGTTTTACCGAGGGTAATTTTTGTAGCAGAAGAAGATGAAGATCGAGATGATGTTGTTTTAGGTTTGGATCAGAATGTGATAAATTCGTATCCTAGGTTACAGTATGGTAAAGATTTGGGACATGATAGTACTTGTTCGATCTGTTTATGTGAGTATAAGGATTTGGAGATGTTAAGGATGATGCCGGAATGTAGACACTATTTTCATCTTTGTTGTCTTGATTCATGGTTGAAACTTAATGGTTCTTGTCCCGTTTGTCGGAATTCACCTATGCCTACGCCGTTGTCGACGCCGTTGCAAGAAGTTGTTCCTCTTTCTCATTACATTGGTGAAAGAAGGGTAAGAAGGTGA 573 0.4241 MSSSNPFSPPPPPPPPLPYLTNLGFGYSIAIALGFLFLLSTLILSSYLCCRTFRNRHNRHNNNNNNNHHRDDGVVLPRVIFVAEEDEDRDDVVLGLDQNVINSYPRLQYGKDLGHDSTCSICLCEYKDLEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPMPTPLSTPLQEVVPLSHYIGERRVRR* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1366 190 SMART ring_2 119 160 IPR001841 -
Tpr5g1366 190 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Tpr5g1366 190 PANTHER RING-H2 FINGER PROTEIN ATL67 17 188 IPR044289 GO:0016567|GO:0016740
Tpr5g1366 190 SUPERFAMILY RING/U-box 104 166 - -
Tpr5g1366 190 Pfam Ring finger domain 118 161 IPR001841 -
Tpr5g1366 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 166 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1366 Tpr-Chr5 26476912 26477952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1366 13 180 C3H Transcription Factor Family AT5G06490 36.957 2.24e-37 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1366 - - vra:106773185 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1366 5 26476912 26477952 Tpr5g1366 5 26476912 26477952 ECH
Tpr6g3645 6 39755698 39756862 Tpr5g1366 5 26476912 26477952 PCT