Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1356 ATGGTAGCAGATAGCGGCGATTTCGCCGGCACCATTTGTTCAATCTGCTACGAAGGTCTCAATCCCATTACCGAAGATCTTCAATCAGTTTCCATCTGTGGCCATGTCTTTCACGAGCTCTGTTTGCAGCAATGGTTCGAGTATTGCACATCGAAGAAGCATACTTGCCCCGTTTGTAAGCAAGGTTGCAAGGCGAAAGATGCGTGTCGGCTTTATTTTCAATCGATTGGAGATGTGAAGGAATCTGTTGTTACTCAGAAGCAAGTTGGTGTTGAAGAAGATGCCGGTGTTTTGCGAAAAGAAGTTAAGAGATTGGAGGGTAAAGTTTCTGGGCTTAGTACTGTTTTGGGAAAACAAACTAAGGAGTTAGATGAACTTAAAGATGAGCTTTGTACTTGCAAGGATCAGACAAAGATAGAAATTGCATCAAAGAATGAAGCCTTGAAGCAAAAAACATCCTTACAATTCCAGCTTCGTGTGAAATCAGAGGAGCTTGAGAAGTCAAATTTGGAGCGTTTTAGATTGCAAGAGAGAAATATGGCTTTGGCTAAAGAACTTGCAGCATTAAAATTGGTGTCTGATGTGGACCTTGGTGAAGATGAGGTTTTGAAGCTTGCCACTTTGGGTAATGGGGCCAACAGTCAAGAAACAGTAGACACATTAAAAAGATCTCTTGTCCTGCGGAACAGGAGTTACAAAGAGTTAATGGCAAAGTGTAATGTTCTGGGGAGAGGTGAGGCTCATTATCGTAAAAAGCTTGAGAAGGCTAAAGAGAAGATTACTAAAGCGAAGGCAAGGCTACAAGAAATGGCGACAATAATGGAAGCAAAAGAGAATGAATATTTGAAGCAACTCAAAGTTGCCAAGAACACTGAAAATAGAATAAATTCAAATTCTGATGTATTCATGGCTAACAAAGTTTCTTCAAAAGAGCAAAGCAAACAAAGTACAACACCAAAGTATGGAATGGATTTGAATAAGAAAGACAACAGCAAACCTTTACAATCTTTGAAGACAGAGAACTCCAAACCTACAAAAAATAAGGATGTGAATATTAGTAATGTAAGTAAACCTACCGTGTCTCCCAATGAAGAGATAGATTGTATCATTATCGACGAAGATGACTTCAAAGGTCATGACAAGGTTGATCTAGGAATGCCAGAAACAGCACCTAGTACAAAGACTAAAACATCATTGCAAGGAATATGCAATTTGGCCGAATCTTCAGGAATTGATATTGACATCGAAACAGCTGACATTACTGCTGACACTATGGATGAAGTTGGGATACTACAAGCCAATGATAAACAAGCTGTACCAATGGTTAACATTAGAAAGGAGTCACCATTAACAACTTCAAGTCCAGTGGATATATGCTTTTCTGGTGGATTGCTTGGTCCTGATGGAACTCAAAGATACTTGGGTAAATGGTGCAAGCGTGGACAAAATGGTGATTCAACATCCACAAAAGGGAATTTGATATCTGTAGGAGCTGATGGTAGAGGTGGCAAAGTCAAAGTTCTAAGGTCTCATAGCCAAGCCTTCTCGGATGGTAAGGAAAATTCAACAGCTTCAAAAAGGTTGAAGCTTGGACCTAACAGAGCAAGTAGTTTACAGCAATCCAGGGGGTGTCTGCAGATTGAACACTTTTTTGGGAGGGTTACTCAGTAA 1671 0.401 MVADSGDFAGTICSICYEGLNPITEDLQSVSICGHVFHELCLQQWFEYCTSKKHTCPVCKQGCKAKDACRLYFQSIGDVKESVVTQKQVGVEEDAGVLRKEVKRLEGKVSGLSTVLGKQTKELDELKDELCTCKDQTKIEIASKNEALKQKTSLQFQLRVKSEELEKSNLERFRLQERNMALAKELAALKLVSDVDLGEDEVLKLATLGNGANSQETVDTLKRSLVLRNRSYKELMAKCNVLGRGEAHYRKKLEKAKEKITKAKARLQEMATIMEAKENEYLKQLKVAKNTENRINSNSDVFMANKVSSKEQSKQSTTPKYGMDLNKKDNSKPLQSLKTENSKPTKNKDVNISNVSKPTVSPNEEIDCIIIDEDDFKGHDKVDLGMPETAPSTKTKTSLQGICNLAESSGIDIDIETADITADTMDEVGILQANDKQAVPMVNIRKESPLTTSSPVDICFSGGLLGPDGTQRYLGKWCKRGQNGDSTSTKGNLISVGADGRGGKVKVLRSHSQAFSDGKENSTASKRLKLGPNRASSLQQSRGCLQIEHFFGRVTQ* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1356 556 SMART ring_2 13 59 IPR001841 -
Tpr5g1356 556 MobiDBLite consensus disorder prediction 298 350 - -
Tpr5g1356 556 SUPERFAMILY RING/U-box 12 65 - -
Tpr5g1356 556 Pfam Ring finger domain 12 60 IPR001841 -
Tpr5g1356 556 MobiDBLite consensus disorder prediction 335 350 - -
Tpr5g1356 556 SMART ringv_2 12 60 IPR011016 GO:0008270
Tpr5g1356 556 ProSiteProfiles Zinc finger RING-type profile. 13 60 IPR001841 -
Tpr5g1356 556 Coils Coil 246 294 - -
Tpr5g1356 556 MobiDBLite consensus disorder prediction 298 324 - -
Tpr5g1356 556 CDD RING-H2 13 60 - -
Tpr5g1356 556 PANTHER RING ZINC FINGER PROTEIN-RELATED 5 555 - -
Tpr5g1356 556 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 62 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1356 2 556 C3H Transcription Factor Family AT4G01270 40.388 1.56e-113 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1356 K11985 - gmx:100812811 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1356 5 26406413 26416175 Tpr5g1356 5 26406413 26416175 ECH