Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1340 ATGACAGTATACAATGCTGCTTTCATCAACACACAGCTCTCAAAACAAACATCAATCTTCGGTCTCCGTCTTTGGGTCCTCATCGGAATCCTCATCGGTTCCATAATTGTCTTCACTCTCTTCCTTCTCTCTCTCTGTCTCACTTCACGCCGCCGCAAAAACCACCACAAAACCACCAAACTCAACCACCACTCTCCTATCATCTCCAAAGAAATCCAAGAAATCATCCACGCGCCGCCCTCATCCGAGATCCATGTCGTCGACACCGTCAAACTAGAACTCCACAACCTCAACAATAATAATAACAACAACAACAACCGTGTTGTTTCAACCAGTGGAGAGAGTAGAGGAAATGGTAGTGTGAGTGAAACGGCGTCGTCTTTTGGAAGTGTGGGACCGGAAGTTTCGCACCTTGGATGGGGAAGATGGTATACTCTTAGAGAACTTGAAGCTGCTACTAATGGTTTGTGTGAAGAAAATGTTATTGGTGAAGGTGGTTATGGTATTGTTTACAGTGGTGTTCTTCCTGATGGTGTCAAAATTGCTGTTAAGAATCTTTTGAATAACAAAGGCCAAGCTGAGAGAGAATTCAAAGTTGAGGTAGAAGTAATTGGTCGAGTACGACACAAGAATCTTGTTAGATTGCTTGGATACTGTGTTGAGGGGGCATACAGGATGCTTGTGTATGAATATGTCGATAATGGCAATCTAGACCAGTGGTTACATGGGGATGTTGGACCTGTAAGCCCTATGACATGGGATATCCGGATGAACATTTTATTGGGCACGGCAAAAGGATTGGCTTATCTTCATGAGGGTCTTGAACCAAAAGTTGTTCACCGAGATGTGAAATCAAGCAACATACTCATTGATCGCCAATGGAACCCCAAGGTTTCTGATTTCGGTCTTGCTAAGCTTCTGCATTCTGACCACAGCTATGTCACGACTCGAGTCATGGGGACATTTGGTTATGTTGCGCCCGAGTATGCGTGCACTGGAATGCTGACGGAGAGGAGTGACGTGTATAGTTTTGGGATACTCATCATGGAACTAATCACCGGAAGAAGTCCTGTTGATTATAGCAGACCACAAGGAGAGGTTAATTTAGTTGAGTGGTTGAAAAATATGGTTGGAAGTCGAAAAGCTGAGGAAGTAGTTGATCCTAAGCTTTCGGAGAAACCATCTTCAAAGGCTCTTAAACGGGCTTTATTGGTTGCTCTTCGATGCGTTGATCCTGATTCCATAAAGAGGCCTAAAATGGGACATGTGATCCACATGCTTGAGGCTGAAGATCTCTTATTTCGTGAGGATCGAAGAGTCACCGGAGAATCTTCTCATTCCCATCGTGATTATCAACGAGAGCATGAGGGTTCGAGTTTAGATAAAAATCAGATAGGTGGAGAGATCACTGATCAAAGTGATGATAGTAGTAGAAGTTACCATCAACATACTAGGCGGAGATGA 1464 0.4385 MTVYNAAFINTQLSKQTSIFGLRLWVLIGILIGSIIVFTLFLLSLCLTSRRRKNHHKTTKLNHHSPIISKEIQEIIHAPPSSEIHVVDTVKLELHNLNNNNNNNNNRVVSTSGESRGNGSVSETASSFGSVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYSGVLPDGVKIAVKNLLNNKGQAEREFKVEVEVIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLDQWLHGDVGPVSPMTWDIRMNILLGTAKGLAYLHEGLEPKVVHRDVKSSNILIDRQWNPKVSDFGLAKLLHSDHSYVTTRVMGTFGYVAPEYACTGMLTERSDVYSFGILIMELITGRSPVDYSRPQGEVNLVEWLKNMVGSRKAEEVVDPKLSEKPSSKALKRALLVALRCVDPDSIKRPKMGHVIHMLEAEDLLFREDRRVTGESSHSHRDYQREHEGSSLDKNQIGGEITDQSDDSSRSYHQHTRRR* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1340 487 SMART serkin_6 156 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr5g1340 487 Gene3D Phosphorylase Kinase; domain 1 137 231 - -
Tpr5g1340 487 Gene3D Transferase(Phosphotransferase) domain 1 232 442 - -
Tpr5g1340 487 ProSiteProfiles Protein kinase domain profile. 156 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr5g1340 487 MobiDBLite consensus disorder prediction 439 461 - -
Tpr5g1340 487 Coils Coil 87 107 - -
Tpr5g1340 487 ProSitePatterns Protein kinases ATP-binding region signature. 162 184 IPR017441 GO:0005524
Tpr5g1340 487 SUPERFAMILY Protein kinase-like (PK-like) 132 428 IPR011009 -
Tpr5g1340 487 PANTHER OS01G0323000 PROTEIN 1 478 - -
Tpr5g1340 487 Pfam Protein kinase domain 159 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr5g1340 487 MobiDBLite consensus disorder prediction 101 126 - -
Tpr5g1340 487 CDD STKc_IRAK 162 428 - -
Tpr5g1340 487 MobiDBLite consensus disorder prediction 439 487 - -
Tpr5g1340 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 278 290 IPR008271 GO:0004672|GO:0006468
Tpr5g1340 487 PANTHER BRASSINOSTEROID INSENSITIVE 1-ASSOCIATED RECEPTOR KINASE 1 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1340 Tpr-Chr5 26203747 26207248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1340 26 432 Trihelix Transcription Factor Family AT5G38560 39.089 5.65e-93 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Tpr5g1340 Pkinase 6.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1340 - - gmx:100777348 729.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0110 6 871129 873465 Tpr5g1340 5 26203747 26207248 PCT
Tpr6g1965 6 21278905 21283426 Tpr5g1340 5 26203747 26207248 PCT