Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1333 ATGGCTGCTGTTAGGTTTTCTCATGTAAAATGTCTACATAGTTCAATCAAGGGTTATTTCAATTTCCAAAATGTTCATAATTACCACTGTAACCCTAATAGGACTTTGAGCTTTGCAAAAATGTCAAGTTCTTGTATTGATTTGTCGAACCGTCACTATTCCAAAAGAGAGTCAAAGTTAGATAAGAATAAAATGTTTGCTCAAAACCAGTTTAGCAATGTGGGATGCAGGGGTTTAAATGCTGCATTTGATTCTAGATTCTCGAGGGTATGTTTTCAGAGGAGTGTTGTTAATGTTCCTTTTGCCAGTAGTGCGATGAGTTTGCGAATGTATTCGTCGTCTTTGGGTGGGAAAGGAAGTAGTGATGGTGTAACAGAAGTGGCTACTGGGTCTGGTGTGAGTGATGTTAATGGTGGTGGTGATTCGGTTGTTTCGGGTGATTTGGTTGAGAGGATGAAAGATACGTGGAAGAGTGTTGTAGAGGCATCTTCATATGTTGGGGAAAAGGTTAAAGAAGGTTCTGATGGTCTTACTCCATATGCTCAACAGTTTCTTGATTCACATCCTTATCTAAACATGGTGGTTGTTCCGGTTGGTGGTACTTTAACTGCTACTCTAGTAGGTTGGTTCATCTTGCCGAGGATTTTAAGGAAATTTCACAAATATGGAATGCAAAGTCCTGTTTCTCTATTTCAAAGAAGCGTGTCTGGGGAGACGGTTCCGTATGAGAAAAGCTTTTGGGGTGCTATGGAAGACCCAGCGCGATATCTAGTTACCTTCTTAGCATTCTCACAAATTGCTGCAATGGTAGCTCCAACAGCTATAGCCACACAATATCTTGCACCCACTTGGAGGGGTGCAGTGATACTTTCATTTGTATGGTTTTTGCATAGATGGAAAACAAATGTTTTTGCACGGACACTATCTAGTCAAAGTGTACTTGGACTTGATAGGGAGAAAATGCTTGCTCTAGACAAAATCTCATCTATTGGTCTATTTGGTATTGGTATAATGGCTTTGGCTGAGGCATGTGGTGTGGCTGTGCAATCTATTTTAACTGTTGGTGGTGTAGGAGGAGTTGCTACTGCTTTTGCTGCCAGAGATGTACTTGGCAATGTGTTCAGTGGTTTATCTATGCAGTTTTCAAAGCCTTTTTCAATTGGAGATACAATAAAAGCTGGATCAATAGAGGGTCAAGTGGTGGAAATTGGTCTTACTAGCACATCATTGCTGAGTCCAGAGAAGTTTCCAGTCATTGTGCCCAACTCATTTTTTTCTAGCCAGGTAATTGTGAACAAGTCCCGTGCCGATTATCGTGCCATTATTACCAAAATTCCTCTGCAAGTCGAGGATTTGAGTAAGATTCCCCAGATATCAAATGATGTAAACAACATGTTAACATCAAATGCAAAAGTATTTTTAGGAAAAGATGTTCCCTACTGTTTCTTGTCACGTATAGAAAATTCATTTGCAGAACTGACTCTTGGATACAACCTCAAGAACATGCGCAAACATGAGTTCTACTCTGCAGAACAAGATATTCTCCTGCAAGCAGTTCAGATCATTAAGAATCACGGTGTTGCTCTTGGCAGTACATGGAATGATGCTAAGTAG 1614 0.4027 MAAVRFSHVKCLHSSIKGYFNFQNVHNYHCNPNRTLSFAKMSSSCIDLSNRHYSKRESKLDKNKMFAQNQFSNVGCRGLNAAFDSRFSRVCFQRSVVNVPFASSAMSLRMYSSSLGGKGSSDGVTEVATGSGVSDVNGGGDSVVSGDLVERMKDTWKSVVEASSYVGEKVKEGSDGLTPYAQQFLDSHPYLNMVVVPVGGTLTATLVGWFILPRILRKFHKYGMQSPVSLFQRSVSGETVPYEKSFWGAMEDPARYLVTFLAFSQIAAMVAPTAIATQYLAPTWRGAVILSFVWFLHRWKTNVFARTLSSQSVLGLDREKMLALDKISSIGLFGIGIMALAEACGVAVQSILTVGGVGGVATAFAARDVLGNVFSGLSMQFSKPFSIGDTIKAGSIEGQVVEIGLTSTSLLSPEKFPVIVPNSFFSSQVIVNKSRADYRAIITKIPLQVEDLSKIPQISNDVNNMLTSNAKVFLGKDVPYCFLSRIENSFAELTLGYNLKNMRKHEFYSAEQDILLQAVQIIKNHGVALGSTWNDAK* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1333 537 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 283 367 IPR011014 GO:0016020
Tpr5g1333 537 Pfam Mechanosensitive ion channel 326 528 IPR006685 GO:0016020|GO:0055085
Tpr5g1333 537 Gene3D - 384 432 IPR023408 -
Tpr5g1333 537 Gene3D - 284 383 - -
Tpr5g1333 537 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 88 535 - -
Tpr5g1333 537 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 88 535 - -
Tpr5g1333 537 SUPERFAMILY Sm-like ribonucleoproteins 368 433 IPR010920 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1333 149 536 Mechanosensitive Ion Channel Family AT4G00290 67.784 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1333 K22047 - gmx:100814954 724.931