Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1322 ATGGGTTTTCCGGTGGGTTACGCCGAAATATTCTTCCCAAACCTATTTCTTCACACTTTAACTCTCCTTGGACTTCTCCGAAACCTCGTCTTCTTCCTCTTCCACTTCCTCGGCCTCTCCGATTTCCTCGAAACCGACACTGTCTGGCCTCACAACGGAGAAACTACTCAAACACAAGAACCTTCGAAGACACCCTCCGTGTCGGCGGTTCTGATCCGGGAGCTTTTACCGGCGATGAAATACGGTGATCTTGCCGGCGGAGTTGAAGAAGGTTGTTGTTGTGCTGTTTGTTTGTTTGAATTCTCCGAGGAAGAAGAGATCCGGTGTTTGAGAAACTGTCGACATATTTTTCATCGGAATTGTGTCGACCGTTGGATTGATCTTGATATGAAAACTTGTCCTCTTTGTAGAACTGGTTTTGTTCCTGATGATATGATGGATGATTATAATCAACGTTTATGGGTTGCTTCTGGTGTTAGTGAGTTTTATAGTTATGCAGATTATACTTCTTCTTTTTAA 519 0.4374 MGFPVGYAEIFFPNLFLHTLTLLGLLRNLVFFLFHFLGLSDFLETDTVWPHNGETTQTQEPSKTPSVSAVLIRELLPAMKYGDLAGGVEEGCCCAVCLFEFSEEEEIRCLRNCRHIFHRNCVDRWIDLDMKTCPLCRTGFVPDDMMDDYNQRLWVASGVSEFYSYADYTSSF* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1322 172 Pfam Ring finger domain 94 137 IPR001841 -
Tpr5g1322 172 ProSiteProfiles Zinc finger RING-type profile. 94 137 IPR001841 -
Tpr5g1322 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 141 IPR013083 -
Tpr5g1322 172 SMART ring_2 94 136 IPR001841 -
Tpr5g1322 172 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 164 - -
Tpr5g1322 172 PANTHER BRH1 RING FINGER PROTEIN 1 164 - -
Tpr5g1322 172 SUPERFAMILY RING/U-box 93 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1322 Tpr-Chr5 25857291 25858257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1322 1 159 C3H Transcription Factor Family AT1G63840 45.399 3.79e-48 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1322 K16281 - gmx:100500261 248.054
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1973 6 21382888 21383633 Tpr5g1322 5 25857291 25858257 PCT